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Detailed information on CNT30378047


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3061753Arabidopsis thalianaArabidopsis lyrata21.257.9689.01282forward

Expression of CNT30378047

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MRSMDVRNCLWGGISGIIYLLRDKVMWKVSPRKESLTLNLGKEFQTRSNLQACSLVLP*

>peptide 2 (32 aa)
MAVRNYLRKSAVTFGKRSLNKFSGGLRTRCSE*

>peptide 3 (33 aa)
MMEQFHIRCQMLSLWRKLGLPLHRHLSSLQTGP*

>peptide 4 (39 aa)
MFLRSQRIRYSLGLRTSSSYAFGSSECMIPIMWSKKNEI*

Sequence

>CNT30378047
GGGAGATCGAATCCTGAGTGCCTACACGTGGCACAGCGTTAGTGGCTCTTACATGTTATTGGATCCTCTTGCAGCTAGTTGAGCTTTTGGGAAGGCCTAT
GTGTAAAGTGTAAAGTGTAAAGTGTAAAGTGTAAACATCTCCTCCTATGCACTTCTTCGTTGGGACCCGTTCACAAGTTGCTTAGGTTTTGCCACTTGCC
ATACTGAGATTCTCAAGAGGAAGTGGTCCGGATAATGCCATGGTGTTGCAGGTATCTCTCCGAGTAAGGCTTCGAGTGTCAGAGCCATCACCAACTGTTA
TGGGTTGACTACCTATACAAAGCTTTATTAGATCTCAACCTGTGGAAGTAATCTAATACAAACGACACTTGTATGGAATTTTCAGGACATGTTTCTAAGA
TCACAGAGGATACGATACTCTCTAGGTTTGAGGACTAGCTCCAGTTACGCTTTTGGGTCCAGTGAATGTATGATACCCATTATGTGGTCCAAAAAGAATG
AGATTTGACGGACGCTCTAGTGGCCAAATTCATATGGCTACCTTCACTCTATGCCTTAAGAGCTGAAAAGTTTCCGTGGTTTCGAATACTTTGCTTCTTT
CAGATTAACGAAAACCCTATTTAGTTGCAAAGACTGAGAAGAGAATAAGAGTCGAGGGACCATATAAAGCTTGTAATTGTACGTTTATGCGGATTCTCCA
CTTTCCATGGCTGTGAGAAACTATCTGAGGAAAAGTGCAGTGACCTTTGGCAAAAGATCACTGAATAAATTTTCTGGTGGTCTGAGAACTCGCTGCAGTG
AATGAATGAGATCCATGGATGTGCGAAATTGTCTTTGGGGCGGCATAAGTGGAATCATTTATCTTCTACGTGATAAAGTGATGTGGAAAGTGTCACCAAG
AAAGGAATCATTAACTTTGAACTTAGGCAAGGAATTTCAAACCAGAAGTAATTTACAAGCATGCAGTCTAGTTTTGCCATAGCAGCATCAGAATGATGGA
ACAATTCCATATCCGGTGTCAAATGTTATCATTGTGGAGAAAGCTTGGTTTGCCTCTTCATCGACATCTTTCTTCTTTGCAAACCGGCCCTTGATCCGTG
GTCTTTTCTCTGCATACGCTTTCCTTGAAGCATATCTTATCGTCTTCTCAAATTTCCTCATCTTCTTCTTCTCTCTGTATCTCAGGACTCTAGCTTCTCT
GTCCCTTGGACTGAGCATCTGAGCTGGAGGGTAAGGTGGTTGGTCTGTTACCGCTTTGGGCGATCTTGGGTTTGATACTGTTGCGTCACTCGTTGTTGAC
TCCGGCACAACTCCCAGGTCCATAGAT