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Detailed information on CNT30378003


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30234942Arabidopsis thalianaBrassica oleracea18.920.2292.13127forward
CNT3061397Arabidopsis thalianaArabidopsis lyrata37.0596.8996.79249forward
CNT3073977Arabidopsis thalianaBrassica juncea9.8222.9292.4266forward
CNT30259939Arabidopsis thalianaBrassica rapa10.1222.8292.6568forward
CNT30614243Arabidopsis thalianaArabis alpina24.8566.0186.23167forward

Expression of CNT30378003

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRPLRRLEKVTCRLLLFSIRLISSFFLPMASLREGFVP*

>peptide 2 (43 aa)
MKTQVRKRRTYRRRRSCRACRRRRRREERRMRHREQKADELSR*

Sequence

>CNT30378003
CGCGCAGAGAGAGAGAGAGAGCCACGTCCCTGTTGCAAAATAAGCCGTAGGCTTCTTCACTGTGAAGCAAACACAAGTTTTTGACAGAAGTGAAGAACAC
ATACACTCAAGATCTCGATGCAATTCTCACACGAATAAGAAAAAAACACAAACAAACACAGAACCGAGAAACAACAAGAGATCCGCCGGAAAAAAACCAA
ACGGTATATTAATTGTTTTTTTATTTTTATTTTCTCAGAAAAGTAAAAGAGCACAAAACAGAAGATAAAAGGGGGAACAAATGAAAACCCAGGTAAGGAA
AAGGCGTACTTATCGCCGGAGGAGAAGCTGTAGAGCTTGCCGGAGGCGGAGACGACGAGAAGAGCGACGGATGCGTCACAGAGAACAGAAAGCTGACGAG
CTTTCTCGATGAGACCGTTGCGACGTTTGGAGAAGGTGACTTGTCGGCTACTTTTGTTCTCAATTCGCTTGATTTCTAGTTTTTTTCTTCCCATGGCTTC
TCTCCGAGAGGGCTTTGTGCCCTAATTTGATCCTCAGGTTTGGGTTCAAGTCGCCGGAGATACTAAGCGTTTTCTCTTTCTATTTTTTTTTTTCCTTTTC
TCGCTTTATTTCTTTCTATTTTTTGTGCCTATCTACTTTTTCTTCGTCGGGCCAGATATTTTTTTTTTTTTG