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Detailed information on CNT30377368


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7Q7|FLC_ARATH, E-value = 4e-32

BLAST vs NONCODE:
NONBNAT004188, E-value = 3e-61

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30479002Arabidopsis thalianaArabidopsis halleri29.2693.3688225forward

Expression of CNT30377368

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRPLRRLEKVTCRLLLFSIRLISSFFLPMASLREGFVP*

>peptide 2 (43 aa)
MKTQVRKRRTYRRRRSCRACRRRRRREERRMRHREQKADELSR*

Sequence

>CNT30377368
ACGCGCAGAGAGAGAGAGAGAGCCACGTCCCTGTTGCAAAATAAGCCGTAGGCTTCTTCACTGTGAAGCAAACACAAGTTTTTGACAGAAGTGAAGAACA
CATACACTCAAGATCTCGATGCAATTCTCACACGAATAAGGTGGCTAATTAAGTAGTGGGAGAGTCACCGGAAGATTGTCGGAGATTTGTCCAGCAGGTG
ACATCTCCATCTCAGCTTCTGCTCCCACATGATGATTATTCTCCATCTGTACGATAATCATAGAAAAGTAAAAGAGCACAAAACAGAAGATAAAAGGGGG
AACAAATGAAAACCCAGGTAAGGAAAAGGCGTACTTATCGCCGGAGGAGAAGCTGTAGAGCTTGCCGGAGGCGGAGACGACGAGAAGAGCGACGGATGCG
TCACAGAGAACAGAAAGCTGACGAGCTTTCTCGATGAGACCGTTGCGACGTTTGGAGAAGGTGACTTGTCGGCTACTTTTGTTCTCAATTCGCTTGATTT
CTAGTTTTTTTCTTCCCATGGCTTCTCTCCGAGAGGGCTTTGTGCCCTAATTTGATCCTCAGGTTTGGGTTCAAGTCGCCGGAGATACTAAGCGTTTTCT
CTTTCTATTTTTTTTTTTCCTTTTCTCGCTTTATTTCTTTCTATTTTTTGTGCCTATCTACTTTTTCTTCGTCGGGCCAGATATTTTTTTTTTTTTGGGG
GTAAACGAGAGTGATGCAAAAAAACCAAATATGTGAATAAAAACGTTGTGTTTTGAAGACAAGATTGCC