Detailed information on CNT30376792


BLAST search results

BLAST vs Swiss-Prot:
sp|P43296|RD19A_ARATH, E-value = 5e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519738Arabidopsis thalianaSetaria italica22.3913.328875forward
CNT3070873Arabidopsis thalianaQuercus suber35.5216.6284.03119forward
CNT3046025Arabidopsis thalianaPrunus dulcis36.4214.4585.25122forward
CNT30311982Arabidopsis thalianaCamelina sativa61.1956.0189.76205forward
CNT30599767Arabidopsis thalianaFraxinus excelsior27.4622.2883.792forward
CNT30714701Arabidopsis thalianaMalus domestica golden36.428.3483.61122forward
CNT30704623Arabidopsis thalianaPrunus avium36.425.284.43122forward

Expression of CNT30376792

Peptides detected in this lncRNA

>peptide 1 (49 aa)
LKLIDEMLNGRWLRRWLQQWRPYCQHHKCYGLCRFCRNHFHPKSLPTSS*

Sequence

>CNT30376792
ATTAAAACTTATTGACGAGATGCTTAATGGGCGGTGGTTGAGACGGTGGCTGCAACAGTGGAGACCATACTGTCAACACCACAAATGTTACGGCCTTTGC
AGATTTTGTAGAAACCATTTTCACCCCAAGTCTCTCCCCACGAGTTCTTGATGATCCAGTAAGGCTTCTCCTTGAACCTAGCCGGAGCGTAACCTGCCGC
TCCATAGCCAACCAATAAGACACCGTTTGCAGCAATCTGTTCTTCATCAATGGAGATAACACTGAAGTTGGAGACAGAGGCAACGATCTTGGACTTGTCT
AGCTTGCAGGTCTTGCCGTCCTTTCCGGTGTAAGG