Detailed information on CNT30374052


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5GM68|CAPP2_ARATH, E-value = 4e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673569Arabidopsis thalianaSetaria viridis25.1822.5485.9271forward
CNT30521774Arabidopsis thalianaSetaria italica25.182.785.9271forward
CNT30368424Arabidopsis thalianaSorghum bicolor21.993.487.162forward
CNT30583511Arabidopsis thalianaEchinochloa crusgalli25.188.0687.3271forward
CNT30497176Arabidopsis thalianaDigitaria exilis29.438.2685.5483forward
CNT30557319Arabidopsis thalianaPanicum hallii25.186.2985.9271forward

Expression of CNT30374052

Peptides detected in this lncRNA

>peptide 1 (60 aa)
LLVVNSKLFTEWLKFFRDEEAINCDTEEWPLVVHLFEHVEILTVLLYHAFECSSKAKPHG*

>peptide 2 (41 aa)
MLLQSQATRVSETSSESTQRSTGLHAATRFLRLVYVLMVGFL

Sequence

>CNT30374052
GTCTCTTGGTAGTTAACTCGAAGTTGTTCACCGAATGGTTGAAGTTCTTCAGAGACGAGGAGGCGATCAATTGTGACACGGAAGAATGGCCATTGGTTGT
ACATCTCTTTGAGCATGTTGAGATTCTTACTGTCCTTCTGTATCACGCGTTTGAATGCTCCTCCAAAGCCAAGCCACACGGGTAAGTGAAACCTCGTCTG
AGTCCACGCAAAGATCCACGGGATTGCACGCAGCGACTCGATTCCTCCGCTTGGTTTACGTTTTGATGGTCGGCTTCCTATG