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Detailed information on CNT30372288


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8W4D6|HC173_ARATH, E-value = 3e-43

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3059806Arabidopsis thalianaArabidopsis lyrata56.8425.7395.28212forward
CNT30262667Arabidopsis thalianaBrassica rapa22.7915.4589.4185forward

Expression of CNT30372288

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MLKLLPKFELRNLASVAAMLLPTILPTIFELCYTNRAQRHNFENKFFG*

Sequence

>CNT30372288
GTCCAACTTCAGTGTAGGCGGAGACGGTGGTGATTGAGGCGAAGGCGGAGCAACGTCGAGCTTCTTCGCAACCGTCTCTTCGCTCTCCTTAGTGGTTATG
GTTCCGGGTCGGGTTTTGGTCTTCTTCTTGTCGGAGGGTGGAGATGGAGACGGAGAAGAAGAAGATTGAGCCCTAGGGATTACGATTTGGGAGCGATCAT
GGAATCTGTGAATTCTGGTGTTGATGCTGAAACTGTTGCCAAAATTCGAGCTTAGAAACCTCGCATCAGTCGCAGCCATGTTACTGCCAACAATACTACC
CACCATTTTTGAACTCTGCTACACAAACAGAGCTCAAAGACACAATTTTGAAAATAAATTTTTTGGATAAAAT