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Detailed information on CNT30371693


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Arabidopsis thalianaSetaria viridis20.8149.7884.96113forward
CNT30306600Arabidopsis thalianaTriticum aestivum14.1824.2985.7177forward
CNT30554195Arabidopsis thalianaOryza glaberrima20.813.7185.84113forward
CNT30254428Arabidopsis thalianaAvena sativa20.8121.0482.3113forward
CNT30669382Arabidopsis thalianaTriticum dicoccoides21.9219.9784.03119forward
CNT3060118Arabidopsis thalianaArabidopsis lyrata39.0472.1197.17212forward
CNT30141866Arabidopsis thalianaLolium perenne20.8118.5981.42113forward
CNT30347540Arabidopsis thalianaEragrostis tef21.9210.0684.03119forward
CNT30368840Arabidopsis thalianaSorghum bicolor16.9425.6385.8792forward
CNT30370517Arabidopsis thalianaOryza glumipatula19.3421.0486.67105forward
CNT30705067Arabidopsis thalianaPrunus avium22.8412.7283.06124forward
CNT30116955Arabidopsis thalianaOryza nivara20.8114.3285.84113forward
CNT30111719Arabidopsis thalianaFicus carica31.8619.1483.82173forward

Expression of CNT30371693

Peptides detected in this lncRNA

>peptide 1 (34 aa)
DIFCRFPGEGYRKQIRTNIVNSPKKSNYICAQMN*

>peptide 2 (30 aa)
MVIIHIQPIEDNSYNSQTMKYLWQEKTQGI*

Sequence

>CNT30371693
CTGACATCTTCTGTAGATTCCCTGGTGAAGGATACAGAAAACAGATAAGAACCAATATTGTAAACAGCCCCAAGAAATCAAATTACATTTGTGCTCAAAT
GAACTAAAGATGAAACCTTTCATATATTTCCATATAAACAAAACCTTCCTGATCTATAATCAGAATCATCCTTCAAGTTTACATTACCTCTCTTAACTCT
TTTAACTTTTTTTTTTTTGGACAAATCTCTTAACTCTTAACTAATACAACATAAACCATGGTGATCATACATATCCAACCTATCGAAGATAATTCGTATA
ATTCACAGACGATGAAATACCTGTGGCAAGAGAAGACTCAAGGGATTTGACGATATTGGTCATGGATTTGGTGATGGTGGTCATCTTAGCCTGAGTATCA
AGACGAGCAACAACAGCGTCAAGGCGAGAAGCGAGACGGAGATAGTTCATCTGCTCGCTACGCTTACGAATGGCGTTCTCAGCGTAGATCCGAGCACCAT
CCATATTACCCTTCTCGATAGCCTTCTTCACCTTCAATTTCTC