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Detailed information on CNT30371513


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697684Oryza glumipatulaOryza sativa66.1492.999.72707forward
CNT30672806Oryza glumipatulaSetaria viridis8.0428.4889.5386forward
CNT30555702Oryza glumipatulaOryza glaberrima10091.9299.061069forward
CNT30597240Oryza glumipatulaOryza meridionalis27.4144.1995.9293forward
CNT30104336Oryza glumipatulaOryza rufipogon97.3893.299.711041forward
CNT30578504Oryza glumipatulaOryza barthii10096.6599.531069forward
CNT30604831Oryza glumipatulaOryza punctata30.6855.8890.85328forward

Expression of CNT30371513

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MMIRWGVSSSSSGALHGRGTSRQLPVVDRG*

>peptide 2 (29 aa)
LEYEFEIQSPPNSISFKPSIYNVQTQDTT*

>peptide 3 (40 aa)
MCLQQVRHDKRYYEHDGQGTRMYVCMLLCHTTIMPYIQAS*

>peptide 4 (34 aa)
SNTNLKFNLPQIPFRSNHRSTMFKHKTQLRLHHY*

>peptide 5 (53 aa)
MIRDIMSMMGRVHVCMYVCCCATPQSCHTYKQAKLMQSLITGCHPATSVPWSI*

>peptide 6 (88 aa)
MTPWRGRRRKAQLGCLVEQLLLQVQLALHPLSSLLLPMVLEEQPQIQPVLHLPSRFRLVLEQECRRLRSCWRLQQFSSPHRCLLEHLR*

Sequence

>CNT30371513
CTCGAATACGAATTTGAAATTCAATCTCCCCCAAATTCCATTTCGTTCAAACCATCGATCTACAATGTTCAAACACAAGACACAACTTAGATTACATCAC
TACTAGTATTACACAGGCATTACCGGGGAATATATCCAAACCACCCTGCCTGATGGGTTGATGGATAATCTTAAATGGATGGATAAGAGGATGCACATCC
ACATCCAACCTTATTCATAGATAGCTAATCAAGTCATTACACATAATACAGCACAGGTACAAACACAGACAGACGGACGGACAGACGACGGTATATATGT
CCTAAGATTAATGTGCTTACAGCAAGTTAGGCATGATAAGAGATATTATGAGCATGATGGGCAGGGTACACGTATGTATGTATGTATGTTGCTGTGCCAC
ACCACAATCATGCCATACATACAAGCAAGCTAAACTGATGCAGAGCCTAATAACCGGCTGTCACCCAGCAACGTCAGTTCCTTGGTCGATTTGATTACAC
AATGCAAATGCGAATGATTCCTAAAAGGCGTACATCACGGACAAGGGGAGGAGGATGATGATTCGTTGGGGGGTTTCATCTTCATCTTCAGGTGCACTTC
ACGGCAGAGGCACCAGCCGGCAGCTGCCCGTTGTTGACAGGGGATGACTCCTTGGCGGGGGCGGCGGCGGAAGGCTCAGTTGGGTTGCTTGGTGGAGCAG
CTGCTGCTTCAGGTTCAGCTGGCTTTGCATCCTCTTTCTTCTCTCCTCCTTCCGATGGTGCTGGAGGAGCAGCCTCAGATTCAGCCGGTTTTGCATCTTC
CTTCTCGGTTCCGGCTGGTGCTGGAGCAGGAGTGTCGGCGTCTGCGGTCTTGCTGGCGTCTTCAGCAGTTTTCATCTCCACATCGGTGTCTTTTGGAGCA
TCTTCGCTAGGGGCCTCCTTCGCCTCTTCAGCAGGCTTTGTCTCTACATCAGTCTCCTTTGGAGCATCTTCGCTAGGGGCCTCCTTGTCAGCTTCAGCGT
CTTTCGCTTCTTCATTTTCGGTGGCCTCCTTTTTCTCCTGCTTGCCCTTTCTGCCAGATGAGTTCCTAG