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Detailed information on CNT30371499


BLAST search results

BLAST vs Swiss-Prot:
sp|P17642|PRS2_SOLTU, E-value = 2e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697656Oryza glumipatulaOryza sativa21.8525.4385.61132forward
CNT30104407Oryza glumipatulaOryza rufipogon48.3492.7100292forward
CNT30604827Oryza glumipatulaOryza punctata46.6967.387.59282forward

Expression of CNT30371499

Peptides detected in this lncRNA

>peptide 1 (38 aa)
SHYLIITHSRWDILDRGSIPLHLRRIRQGERRGSPRSS*

>peptide 2 (57 aa)
MSFSFSGDSELPSSSSYSTLSLATQEPSPVASSFVSVECDLSFPTLLSASSTSDFRT*

>peptide 3 (45 aa)
MSSTKPAQALGKADASMNAFHSRSADTATACSSETQAGAITEDII*

Sequence

>CNT30371499
GCTCTCATTATTTAATTATCACTCACTCTAGGTGGGATATACTGGATAGAGGCAGTATTCCTCTTCATCTTAGGCGTATTCGGCAGGGTGAGCGACGAGG
TAGTCCTCGATCATCTTGAGCATGCCATAGTAGCCATCCACGATGTCCTTCTCCTTCTCCGGCGACAGTGAGCTGCCGTCCTCGAGCTCGTACTCCACCT
TGAGCTTGGCCACACAGGAGCCATCGCCGGTGGCCTCAAGCTTCGTCTCCGTCGAGTGTGACTTGAGCTTCCCCACCTTGCTTTCTGCCTCGAGCACATC
CGACTTTAGGACATGACTTGCGGCGTCGCACACCGCCACCCGGGTCTTGGTTAAGCTTCATGGTGTAGACGGTGCCCGGACCACCGTTCCCCTCGACCGC
AATGTCGTCGACCAAGCCGGCGCAGGCCTTGGGCAAAGCGGACGCGTCCATGAACGCCTTCCACAGCCGCTCCGCCGACACCGCGACGGCGTGCTCGTCG
GAGACGCAGGCCGGAGCCATCACTGAAGATATAATCTAACTAGCTAGCTAGTTGCAACTGATCACTCTACTGACCACTGATGCCTGTAGCTAGCTAGAGC
TGCT