« Back to Oryza glumipatula search


Detailed information on CNT30371221


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104142Oryza glumipatulaOryza rufipogon46.6110099.24659forward
CNT30117006Oryza glumipatulaOryza nivara45.7682.3299.23647forward

Expression of CNT30371221

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MSHRSKREIAPPTPQALPPGVPWWGGVVKPGVAFPLSGEAMAVPSWWTAPPLQSNSFVSPYGAWMGAVPTPPDGQGSQNTSNDPLERT*

>peptide 2 (35 aa)
MNPYRLAYHLGELAKIPLDVSRGGDDDEENDDDKD*

>peptide 3 (60 aa)
MEYKEGVLLQFVEKGCVLSLVFRMHDFQTARRYAFCEKFIYESCFKNHINLFFKFFIANT*

Sequence

>CNT30371221
ATAATGCACTCAACAGGAAACAAGATTGATGGAACTATGGAAGCACACAAGATCATTAACTTATATCTAAATTAAGATTAATGATGCGATTTTAAGACAT
ACTTGTGTCCCGAGTCGGAGATCCGATCGATATCGGCGGCAAAGGCTAAGGGCAGCCGCAACAGGTGCCGTTAAGCACTCTACAAAAATCCATGTCATCA
ATCTCTCCTAGGTGGAAGACAATAAATTAGGAAAGAGAACACAGCTCTCTACAGACCTGGTGAGAGCCGATATACACAAATCGAGACTCACAACGACACC
GTATCGACACAAGCTGCAGCTATTCAACGCGTTTTCTCGCCAAAGGGGATCGGGTGTTCCCTGCACGCCCCTGCGTCTTCCTCCTCGCGCGCTCTCCTCT
TCTCCAGGGCGCCAAATCCCCATGGCTGCTAATCTTTCCGCGTAGTTTATGCGCCAAATCACCCTCTTATTCCCGCGGTAGACCCAAGCCAAGTTTGCCC
CTAATCCATAAATCCACCGCTTGTCGCTCAGTCTTCCTGAAACTCATCCCTAATCCTCATATCTCCTCAAACCTCAAGTGATGAGCCATAGATCCAAGCG
GGAGATTGCTCCTCCAACGCCTCAAGCTTTGCCTCCCGGCGTTCCTTGGTGGGGTGGTGTAGTGAAGCCCGGCGTCGCCTTCCCTCTGTCTGGTGAAGCC
ATGGCTGTTCCAAGTTGGTGGACAGCACCTCCACTGCAGAGTAATTCATTTGTTTCCCCATATGGAGCTTGGATGGGTGCCGTACCAACACCACCAGATG
GCCAAGGCAGTCAAAATACATCCAACGATCCATTAGAGCGGACATAAGGATGGAGTACAAGGAGGGGGTGCTCCTCCAGTTCGTCGAGAAGGGCTGTGTT
CTTTCCCTCGTTTTCCGCATGCACGATTTTCAAACTGCTAGACGGTACGCGTTTTGCGAAAAATTTATATACGAAAGTTGCTTTAAGAATCATATTAATC
TTTTTTTCAAATTTTTTATAGCTAATACTTAATTAATCACGTGTTAATCTATCGTTCCGTTTTCCGTGCTGAGGGGAGTTCCCAACCCCTCCAAAAGAAC
ACAGCCGTAATTCGAGCTCACTGTCAATGAGGCACAATGAAGATGGTGGCGAACTGGCGATGGTGATGATGATAAAAACGTGAATATTAGAGAATGACCT
AATATCAAATAATTAGAAGGGGTGAGGCTATGAACCCATACCGACTAGCTTATCATCTCGGTGAGCTAGCCAAAATACCCTTAGACGTTTCTCGTGGTGG
TGATGATGATGAAGAGAATGATGACGATAAGGATTAGTGCGAGTTAATACTCCATTCCTTCCTTTATAATTGACACTGTTAACGAACTATTTACCGAAGA
AAGCAGCACTCGGG