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Detailed information on CNT30371066


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000416, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554995Oryza glumipatulaOryza glaberrima88.6153.8993.68949reverse complement
CNT30103666Oryza glumipatulaOryza rufipogon97.3960.7594.731043reverse complement
CNT30577934Oryza glumipatulaOryza barthii98.0460.194.671050reverse complement
CNT30551178Oryza glumipatulaOryza brachyantha25.869.5483.03277reverse complement

Expression of CNT30371066

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RPSRISIVHRLIYRKAFDMYTQVFTEIII*

>peptide 2 (33 aa)
ATIQDFDRAQIDIQKSFRYVYPSFYRNYYIKDN*

Sequence

>CNT30371066
CGCGACCATCCAGGATTTCGATCGTGCACAGATTGATATACAGAAAAGCTTTCGATATGTATACCCAAGTTTTTACAGAAATTATTATATAAAAGATAAC
TAAGACAGGTTTTAGGGGCCGACAGGCCAAACACACTCCCTACAAACAAAAGACCCAAACACAAAATAGGATAAAAACACCACAGGCAACGCCAGAGAGC
AGATCGACCTAGAACAAGAACTCGTCAGCACCATAGAATTATTCCCCTTCCTGCGCCTCCTCAGGGAAGAACTGATCGTCTGAACCATATTTTATGCAAG
AGATGAGTACCGAGGTACCCAGCAAGCCACATCCATAATAATACAAATAGAATATATGCAAGGCGTACAAAGAATATAGTTCATCAAGGAGGTTTCATAA
CAAGCCTATTATAAATAGTTTTCCTACTTTATCAAACATTTTATTCGCAAACAATTGTAAATCATCATTTTAAAACGGTAGCAATATTAATCACCATTCA
TCCTCATCTTCATCATATTCCATATTTGAATTTAAAATCTACTCATACCATGATAAATAGGAATCACCCAATGACATAGCTTCTTAACCGGAAGCACGGC
ACATTCGAATGATTTAAGACTCACCTCTGCAGAGACTGCCCAGCTTTACCCACCTGATGTCAACAGCTAGCTAGGTTGAGGACAACATAGCCGTTCGAGA
GTCCCACTTACTACTAGTTACTGCCCAGTGGGATATTGATCCGTCCTAGCAGTCGGGCACTTGCTGGGCCTAAGCAAAGCTAGACGGTCGCTGCTTTCAC
GGGTTCCACCGTTGTGGATCATGTCAACCTGGCCAAAGCCCCTTCCACATGTCCATCCCAAACCTGCTCATAGAGCCACCCTACAGTCTTTCATATAGTG
AGACAATGTACTAGGCTAAGTTTGATTACTCAGTCCTGTGGATGGGCGCAAATTACATCATTTTCCATGGCATAGGTGTAGTCCTTATATCCGGGGAAAA
CCACCAAAACTAGCACAGGCCCGTGCATACTTCAAGTGTAAATATACACTTTCCACAAAATAATTATAACA