Detailed information on CNT30371057


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695021Oryza glumipatulaOryza sativa10.9427.8695.72304forward
CNT30106592Oryza glumipatulaOryza longistaminata24.4136.0192.48678forward

Expression of CNT30371057

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNSYCKSGSMINSAHSTNKSTTILKQQGPVQ*

>peptide 2 (46 aa)
MNKKNDRTNSTTIYNRNFGFSQIHFYVDNSIKAVHSRRSKTPQIQL*

>peptide 3 (45 aa)
MSLVICFPIADLFPLRSCSVLFCLPHLSSTHKKKGMEHHHVETKI*

>peptide 4 (55 aa)
MKFQLCVVGSSTSSSEALWEEGISLYQIFLVAEELGHPRAIIYKEPDLGCLFLMS*

>peptide 5 (50 aa)
MLARSIPPSLLTKRNECIKRIESTCSGPSGRKEAYGAINWSASTTIRESI*

>peptide 6 (61 aa)
MFCSKCYWMFSLVVHVAYVIYDQWVLADKRMHINNNWWRRIMRLVKSASCNYVTGNMLSYS*

>peptide 7 (56 aa)
MLKLIYYIMFLCFVVQTFSRDNLCIHSIIFFSTANSGKQQCWDDFYKQDMNARKLN*

>peptide 8 (64 aa)
MAHERKSVKKIISSLMILEIVKKYYITYQSHSKSDSFHIIQLRFRLKNIIKKCDTNDISLILSL*

>peptide 9 (35 aa)
MVKSTEKLQSKLLAATLGVTGDFSSEDQSRNIGTI*

>peptide 10 (31 aa)
MLAMIKLPKKCAVVVVMSCEAQQAEQISVIY*

Sequence

>CNT30371057
TTATAATTCTATGCTGTAGGATGAATCGATGTTCCACATTATGATTCTAAGGGAGGTATTGTCCGTCCTTCGCCTATCTCCTCTCTTGTAAGATTTTGGA
ACTGATCGAGTTAGCCAAACACTTTCAAGTCACCTTGAGATCTTACTAGAGGCAAACGCGCGCTTTGCGCGCTGCACCGGTGGCCTCAGAAAAGAAGACT
TCGATTATTTTAGTAAAATGAGTGAAGGAAGATGCATTATGGCATACAAGAGTACCAATTCTGTAATATATAATCCAATCTTGATAGAAAACTAAATCTC
AATTTACAATATAGCGTATCAAAACATCTGTAAACATCTATTTAATTAATTGAGCAGGAGTTGTGCAGTAGGAATTTTGACAGGATGAATAAAAAAAACG
ACAGGACAAATAGCACAACAATTTACAATAGAAATTTTGGCTTTTCACAAATCCATTTCTATGTTGATAATAGCATAAAAGCAGTCCACTCAAGGCGGAG
TAAAACGCCACAGATACAATTGTGAATTGAGACTTAATTTTCTACCAAGTTTGTGTTTTAGCTGAACTGCTGAAGCACTAAAGCACAAACTAAAACTTTT
TTAAAAAAATAAGATTCTCCAAGAGTTCGAAGCTATCAAACAGCACCAGGCAGTCAAGTTGTAGAGATGGTGAAAAGTACGGAGAAGCTGCAGTCTAAGT
TGCTTGCTGCTACATTAGGAGTAACAGGTGATTTTTCATCTGAAGACCAATCCAGAAATATTGGGACAATCTGACTGAATAACTGCTAATTATAACCAAT
GTTTTGCTCTAAGTGTTATTGGATGTTTTCATTAGTGGTACATGTTGCTTATGTAATCTATGATCAATGGGTGCTTGCTGATAAAAGAATGCATATAAAT
AACAATTGGTGGAGGCGGATAATGAGGCTGGTCAAGTCAGCCTCCTGCAATTATGTCACTGGTAATATGCTTTCCTATAGCTGATCTTTTCCCTCTTCGG
TCATGTTCTGTTCTGTTCTGCTTACCACACCTCTCCTCCACCCACAAAAAAAAAGGTATGGAGCATCATCATGTAGAAACTAAAATTTAAGTTGACTCAA
ATTAAGTAGAAAACATGCTAGCAAGAAGTATCCCTCCCTCACTGCTGACAAAAAGGAATGAGTGCATCAAAAGAATTGAGAGTACATGTAGCGGTCCTAG
CGGAAGAAAGGAAGCATATGGAGCAATAAATTGGTCTGCCTCTACTACTATTAGAGAGAGCATATGACATGCTTGCAATGATCAAACTTCCGAAGAAATG
TGCGGTTGTTGTCGTTATGAGCTGTGAGGCCCAGCAAGCAGAGCAGATTAGTGTGATTTATTGATTCTATATGTTAAAATTGATATACTACATCATGTTT
CTATGTTTTGTAGTGCAGACTTTTTCTAGAGATAATTTGTGTATCCATTCAATAATATTTTTTTCTACAGCTAATTCAGGCAAACAACAATGCTGGGATG
ATTTTTATAAGCAGGACATGAACGCTAGAAAGCTAAATTGACACCCTGGTGCCTCCCGTTTATAGATGTCACCAACAAGTAAGAGTGTTCCTCTCGTATT
TATATTGGAATATTGTTATTGCTTCTATCTGTAAAACCTGAAAAATCTAAAACCATTCCTATACTGAATAATAGAAGATATAAAATGAATATGTGTTGCC
ATTGCATCCTTATATTTATTTCTTCAATCCACAATTAACTATCTAAACCACTTTTTTTATTTTAATTCACATAAATTAAATCTTACAGATGTTTATATAA
GCTGCTTCCATGAATTCCTACTGTAAATCTGGTTCTATGATTAATTCAGCACACTCTACAAACAAAAGCACAACAATTTTAAAGCAGCAAGGACCAGTAC
AGTAGGAATATTTCAAAAATGAAATTTCAGCTTTGCGTGGTAGGAAGCTCAACCTCCAGCTCTGAAGCTTTATGGGAGGAAGGAATTTCATTATATCAAA
TTTTTTTGGTTGCTGAAGAGCTTGGCCATCCGCGGGCAATAATCTATAAAGAACCAGACCTTGGTTGCTTGTTTCTGATGAGCTGAAATAAAATAAAGCA
GACATGCCAATTGACCTAGTGAGATCCCCTCAAATGTGAAGCGCCAAGTGAGATCCCCTCCAATTCTTCACGTTGTATTCAATTATTTTTTTAAGTAGTA
CATGGCACATGAAAGAAAAAGCGTTAAGAAGATCATCTCTTCATTGATGATATTAGAAATAGTTAAGAAATACTACATTACTTACCAAAGCCATTCAAAA
TCAGATAGCTTCCATATAATTCAGTTGAGGTTTAGGCTTAAGAATATTATTAAAAAATGTGATACTAATGATATTAGTTTAATATTGAGCCTATAAAACA
TAAACTGATAGTTTCCTTTTGTCAAGCTGGTAATACATTTTATTACAAGATAAAAAGAACACGTGTTATTACAAATAAACCAATCTTTTCTGCTCATTCC
TACTGTACTGTTCCTTGCTGAAAAAGATTATATTGCAACAGATGATTAAAGATAGTTGTGGTTTGTAGTGTTAAGGATTTAAGGTGGGGGTTTCTACCAG
ATCATTTGAAGTGTGCCTCTTGATTTGCAAAGCAACTGTAAGTAGACCACATAAAAGAATGAAGCAAACAAATTTATGAATCTCGATAGCTAAAGATTCA
TAAAGAGCAATCTAAAGAATGCAATAAATCAGTAAAAGAGGTTGAATCAAAACAGAAAGCCAACCTCTTATACTTTTT