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Detailed information on CNT30370989


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 2e-47

BLAST vs NONCODE:
NONGMAT001327, E-value = 2e-52

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695897Oryza glumipatulaOryza sativa27.5229.1598.84172forward
CNT30671259Oryza glumipatulaSetaria viridis37.9257.9598.31237forward
CNT30523218Oryza glumipatulaSetaria italica37.643.0497.87235forward
CNT30317753Oryza glumipatulaCorylus avellana37.1233.3382.33232forward
CNT30546681Oryza glumipatulaIpomoea triloba32.9643.8383.01206forward
CNT30703567Oryza glumipatulaQuercus lobata17.1221.1988.79107forward
CNT30375418Oryza glumipatulaArabidopsis thaliana14.0837.2987.588forward
CNT30617135Oryza glumipatulaSesamum indicum36.822.9384.35230forward
CNT3069058Oryza glumipatulaQuercus suber26.7219.0983.23167forward
CNT3042757Oryza glumipatulaPrunus dulcis34.0835.1582.63213forward
CNT30178072Oryza glumipatulaSecale cereale38.5644.4695.02241forward
CNT30286550Oryza glumipatulaTriticum aestivum38.5639.997.1241forward
CNT30221015Oryza glumipatulaHordeum vulgare36.1642.8895.58226forward
CNT30386576Oryza glumipatulaTriticum turgidum37.9240.4495.78237forward
CNT30565712Oryza glumipatulaActinidia chinensis22.446.8290140forward
CNT30554906Oryza glumipatulaOryza glaberrima26.8829.0799.4168forward
CNT30435717Oryza glumipatulaAegilops tauschii38.5639.797.1241forward
CNT30256114Oryza glumipatulaAvena sativa39.5247.8794.74247forward
CNT30656490Oryza glumipatulaTriticum dicoccoides37.9238.3595.36237forward
CNT3059678Oryza glumipatulaArabidopsis lyrata19.0424.7484.87119forward
CNT3082467Oryza glumipatulaBrassica juncea33.4429.1581.82209forward
CNT30261175Oryza glumipatulaBrassica rapa29.1238.5680.77182forward
CNT30444399Oryza glumipatulaSaccharum spontaneum38.0839.9397.48238forward
CNT30135649Oryza glumipatulaLolium perenne37.9246.294.09237forward
CNT3015042Oryza glumipatulaZea mays25.2826.6996.2158forward
CNT30229571Oryza glumipatulaAnanas comosus2436.4192.67150forward
CNT30679384Oryza glumipatulaTriticum urartu38.5639.7794.61241forward
CNT30348363Oryza glumipatulaEragrostis tef37.642.1997.87235forward
CNT30620798Oryza glumipatulaCajanus cajan21.4425.6783.58134forward
CNT30596905Oryza glumipatulaOryza meridionalis26.8827.63100168forward
CNT30357929Oryza glumipatulaLactuca sativa17.1223.8885.05107forward
CNT30645456Oryza glumipatulaCannabis sativa31.0425.2986.08194forward
CNT30325970Oryza glumipatulaAsparagus officinalis27.224.6484.12170forward
CNT30331117Oryza glumipatulaDioscorea rotundata24.1615.9581.46151forward
CNT30147953Oryza glumipatulaBrachypodium distachyon37.9227.2794.94237forward
CNT30101647Oryza glumipatulaOryza rufipogon37.7625.3298.31236forward
CNT30577582Oryza glumipatulaOryza barthii26.8826.42100168forward
CNT30581397Oryza glumipatulaEchinochloa crusgalli25.2826.9298.1158forward
CNT30496126Oryza glumipatulaDigitaria exilis37.9234.8594.51237forward
CNT30117527Oryza glumipatulaOryza nivara26.8829.17100168forward

Expression of CNT30370989

Peptides detected in this lncRNA

>peptide 1 (40 aa)
KIQIGSKSETARALEISKSLKTNWAIQVAKRSHSTARDCN*

>peptide 2 (72 aa)
MRFTPPLLASLRIAGFVIPWMLSRSTFLCLFAPPFPSPLPPLPLPDIAAAAAARRRSRGRNFDLVRSGWRRW*

Sequence

>CNT30370989
TGAAAATCCAAATAGGGAGCAAATCAGAAACTGCTCGTGCTCTTGAAATTTCAAAATCGCTCAAAACAAATTGGGCAATACAGGTTGCAAAACGTTCACA
TAGCACGGCAAGAGATTGCAACTGAATTTAGAGGGTAAATCACTGCAGATTTCCTATTCCATTCGAACGAACGAACCAGTAGTTCATACATCCCTAACTA
ATGAAGGAACAGGAGACGAGATGAAACAACAGCTACAGGAGAAGAGGGTGCGGCCCTGGCGCTTGAGCGCGTAGACGACGTCCATGGCGGTGACGGTCTT
GCGGCGGGCGTGCTCCGTGTAGGTGACGGCGTCGCGGATGACGTTCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATCAGCCCGGAGATG
CGCTTCACGCCGCCCCTCCTCGCCAGCCTCCGGATCGCCGGCTTCGTGATCCCCTGGATGTTGTCGCGCAGCACCTTCCTGTGCCTCTTCGCGCCGCCCT
TCCCGAGCCCCTTGCCGCCCTTGCCTCTCCCAGACATCGCCGCCGCCGCCGCCGCTCGCCGCCGGTCGCGAGGAAGAAACTTTGACTTGGTGAGAAGTGG
TTGGCGGCGGTGGTGATGAGGTGGG