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Detailed information on CNT30370926


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695632Oryza glumipatulaOryza sativa37.4349.4198.91460forward
CNT30554735Oryza glumipatulaOryza glaberrima10083.3298.861229forward
CNT30596737Oryza glumipatulaOryza meridionalis33.7768.2696.87415forward
CNT30577292Oryza glumipatulaOryza barthii90.3210098.921110forward

Expression of CNT30370926

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MMVLCHGSDRCCSRLSKGPFCVTLCCTRNPKNASIASLPATTTSTKIQNNGVVSLYAALLFF*

>peptide 2 (84 aa)
MHAGNNYHNTHSKSESHHIHLSLSPPPNSLTSYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 3 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 4 (37 aa)
MHTPQKKKEETRREHLPSPNHRFHQPELIKLLEMPWP*

>peptide 5 (34 aa)
MLLRVLVRIVPLASSFSLASRVGSKLRGLKTLPG*

Sequence

>CNT30370926
CTTTGAATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAACCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGA
TAGCTAGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGA
TCCATGCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTT
ATACATGCATACTCCACAAAAAAAAAAAGAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTT
GAGATGCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGATCAGACAGGTGCTGCAGCAGGTTGT
CGAAGGGCCCCTTCTGCGTCACGTTGTGCTGCACCAGGAACCCCAAGAACGCCAGCATCGCCAGCCTCCCTGCAACAACAACATCAACAAAAATTCAGAA
CAATGGCGTCGTTTCATTGTATGCTGCTCTTCTTTTCTTCTGATATATTGACGTGCAATGCTTTTACGTGTTTTGGTTAGAATCGTACCGTTGGCGAGCT
CCTTCTCCTTGGCCTCGAGGGTGGGCTCGAAGTTGAGGGGGTTGAAGACGCTGCCGGGGTAGCCGCACTCGTGCGGCGGGAGGCTGTAGCTCTTGAAGAT
GGGGTCCTGGTTGACGCAGCCAGGGTTCTTGATGTCCTGCCACCGCCGGATCTCCACGTAGTGGAACAGGATGAACTCGATGACGAACAGCGTCGACGAC
GACGCGAAGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCTGCCCGAACATTACGCCTCGTAGTCGGTGCGCGGGCGAGGCGGGTGG
AGGATTGCCCCAGGAAGGTAGACTTGAGCGACGCCGACGGGCGGAGGGCTGCGACCGGGGCGCGGGCGGTGACAGACGCCATGGCTTAGCTTCCCCGGCT
TAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTACGTTTTGGCCGGCACGGAGCAAAGGCGTGGCTTGTATTAAACTGTCCGGGAGTGGCCGG
CGCTGCCAGGTGGCCACGGCGGCGAGGGC