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Detailed information on CNT30370682


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7F1U0|PER22_ORYSJ, E-value = 6e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694715Oryza glumipatulaOryza sativa29.724.1791.67240forward
CNT30672255Oryza glumipatulaSetaria viridis29.5856.6487.87239forward
CNT30180126Oryza glumipatulaSecale cereale33.5445.6289.67271forward
CNT30221499Oryza glumipatulaHordeum vulgare33.1792.184.33268forward
CNT30386567Oryza glumipatulaTriticum turgidum1227.2587.6397forward
CNT30554321Oryza glumipatulaOryza glaberrima20.6734.3685.63167forward
CNT30659540Oryza glumipatulaTriticum dicoccoides39.7389.9281321forward
CNT30680601Oryza glumipatulaTriticum urartu9.1621.2690.5474forward
CNT30348947Oryza glumipatulaEragrostis tef18.1932.5987.76147forward
CNT30596630Oryza glumipatulaOryza meridionalis89.3694.0195.29722forward
CNT30102748Oryza glumipatulaOryza rufipogon48.8951.6389.11395forward
CNT30577207Oryza glumipatulaOryza barthii87.580.8997.45707forward
CNT30117253Oryza glumipatulaOryza nivara61.6366.6799.8498forward
CNT30604331Oryza glumipatulaOryza punctata83.7998.2687.74677forward

Expression of CNT30370682

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MWCGPFMSSSTRFASSNERIPSYYSLIRSSPWSS*

>peptide 2 (50 aa)
MFPIFTMAVVKALLNAAALDAKFLTVLSALPPLKSTWSECRSPLFDSRLL*

>peptide 3 (36 aa)
MRSFYFGILGANAMAALLHTLDGLLERAGCHILYVY*

Sequence

>CNT30370682
CAATCTAGTGTTGTTTACTTGAAAAAACGGAGCTTGATGTACCGTAAAAGTCTGGAGAAGTTGTGAACGGACATGTGTGTGAAGGTAACAGTTCATTGAT
CCTCCATGCATGCCTTCGCATGAGGAGCTTTTATTTTGGTATACTAGGTGCTAATGCCATGGCTGCTCTGCTCCATACACTTGATGGATTGCTAGAGCGA
GCTGGCTGCCATATACTTTACGTGTACTAGTACAACACCACCGTACCTATACTTGTGGTTATACTACATATATGGGTATATGTGGTGTGGCCCGTTTATG
TCGTCGTCGACACGATTTGCTTCCAGCAACGAACGCATCCCGTCATACTACTCCTTAATTAGGAGTTCACCTTGGAGCAGCTGAGCCTGATCTGCCCCTG
CGTCCCGGTCAGCGGCGAGATGTTCCCCATCTTCACCATGGCCGTCGTGAAGGCGCTGCTGAACGCCGCCGCGTTGGACGCGAAGTTCCTGACCGTGTTG
TCCGCGCTGCCGCCGTTGAAGAGCACCTGGTCGGAGTGCAGGAGCCCCTTGTTCGACAGCAGGTTGCTGTAGTAGGCGTTGTCGAAGGCGTTGGGCGTCG
TCGTGTCCAGCGCCGCCAGGTTGCTGTCGCCGCTGCCCGTCGGCCGTGGGCAGTTGGCCTGGCGTTGCGTCGCGAAGGCGGAATCGATGTTGGTCTCGTT
GTAGATCCTGTCCCTGAAGTTCTGGCACTGCGCCTGCCCGATCGTGTGTGCTCCTGCGAAATAATTAATCGCGCTCTCATCTTATCAGAAAATCTGCAAC
ACATATAT