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Detailed information on CNT30370676


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577180Oryza glumipatulaOryza barthii45.5431.9695.88194forward

Expression of CNT30370676

Peptides detected in this lncRNA

>peptide 1 (66 aa)
AFSFTFSASHRPPRMRCAREHHPPPASPSSSSRKTGAPPLLLLCCSCWKEEKRRKRREEEEGEKEK*

>peptide 2 (97 aa)
GLLLHFLRQPPPSPDALCSGTPPAAGVAIFQQPENRRPSSPSPLLLVLERGEKKEETGGGRRRKRKIKDTDRVYLEFLPKLGVQSHKLVSFKTSLQV*

>peptide 3 (70 aa)
RPSPSLSPPATALPGCVVLGNTTRRRRRHLPAAGKPAPLLSFSSAARAGKRRKEGRDGRRKKEKKKNKRY*

Sequence

>CNT30370676
CGGCCTTCTCCTTCACTTTCTCCGCCAGCCACCGCCCTCCCCGGATGCGTTGTGCTCGGGAACACCACCCGCCGCCGGCGTCGCCATCTTCCAGCAGCCG
GAAAACCGGCGCCCCTCCTCTCCTTCTCCTCTGCTGCTCGTGCTGGAAAGAGGAGAAAAGAAGGAAGAGACGGGAGGAGGAAGAAGGAGAAAAAGAAAAA
TAAAAGATACTGACAGAGTCTATTTGGAGTTTTTGCCGAAGCTGGGAGTTCAATCACATAAGTTAGTTTCCTTTAAAACTAGTCTTCAAGTCTAGTATAG
TTAGACGGTTTAATTCTATAGTAAAACGGCAGAATTGGGTCATAGTATAGCTTCTGCTGTAATAGTTAGCCACAAATTTGTAAATGTCCTATTATTTTAT
ATAAATATATCTCCTTTGGAGTCTTG