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Detailed information on CNT30370660


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 3e-63

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694973Oryza glumipatulaOryza sativa60.141.0299.42345forward
CNT30180108Oryza glumipatulaSecale cereale35.5493.1592.65204forward
CNT30289434Oryza glumipatulaTriticum aestivum41.9941.6292.95241forward
CNT30221546Oryza glumipatulaHordeum vulgare35.7189.9194.15205forward
CNT30554471Oryza glumipatulaOryza glaberrima95.6499.6498.18549forward
CNT30436341Oryza glumipatulaAegilops tauschii32.0660.5394.02184forward
CNT30251924Oryza glumipatulaAvena sativa41.1143.3893.22236forward
CNT30658643Oryza glumipatulaTriticum dicoccoides41.1153.2791.1236forward
CNT30450022Oryza glumipatulaSaccharum spontaneum40.7722.6393.59234forward
CNT30680880Oryza glumipatulaTriticum urartu41.1145.6591.1236forward
CNT30596591Oryza glumipatulaOryza meridionalis40.9449.8997.87235forward
CNT30148227Oryza glumipatulaBrachypodium distachyon29.7967.8689.47171forward
CNT30102628Oryza glumipatulaOryza rufipogon89.0240.2799.22511forward
CNT30577143Oryza glumipatulaOryza barthii88.3310098.22507forward
CNT30117165Oryza glumipatulaOryza nivara77.799.5599.55446forward
CNT30604388Oryza glumipatulaOryza punctata27.1846.9998.08156forward
CNT30556620Oryza glumipatulaPanicum hallii38.522.4694.12221forward

Expression of CNT30370660

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLFTMRMQRKPLPTSLLSVHSTDSSWYSGL*

>peptide 2 (43 aa)
LKNSCAYASDQRHAQHICKFNQAPTVCAYICVAQREELLLPGN*

>peptide 3 (38 aa)
MLQIKDMHSIYASLIKPQLYVLIYVSPSERSSYCQVIN*

Sequence

>CNT30370660
ACCTGAAAAATTCGTGCGCATATGCTTCAGATCAAAGACATGCACAGCATATATGCAAGTTTAATCAAGCCCCAACTGTATGTGCTTATATATGTGTCGC
CCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAATTAACTTGTACAGATACAAGCACACCACACGATAATCATACGGTACGGACGAGCATAAGTTACTCT
TAGCTACGTATATAGGTGGGTAGCTAGCAGAGAATAATTATTCTGCACCAGATTCGTTGATATCAACTTGAGCCTTGATAGAGAGCTGGACCGATGTATC
GATCAGCTCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCACGATGTCGGTGCCGTCGCGGACGCCGCCGTGGTA
CTTGTCGCCGTGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGGATGCAGCGGAAGCCCTTGCCCACATCCTTGCTCTCCGTCCACAGCACA
GACTCGTCCTGGTACTCTGGGTTGTAGGGAACCAGCTTCACCTGCATGCGCAGAGCAAATCGTTCGTTGTGATT