« Back to Oryza glumipatula search


Detailed information on CNT30370658


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692203Oryza glumipatulaOryza sativa44.7914.9189.38292forward
CNT30596498Oryza glumipatulaOryza meridionalis45.430.6785.47296forward
CNT30100787Oryza glumipatulaOryza rufipogon43.7129.1194.04285forward

Expression of CNT30370658

Peptides detected in this lncRNA

>peptide 1 (93 aa)
LALSAVFGSSASYRRLEAEVRYDPLGIEQPHRRQHPLVICWDAATIFICSNMAFPGGAALVVTVSRHRSIGGPCGDAVYAEGAVASPWLTDRS*

>peptide 2 (37 aa)
SLSPLYSDRALATGDSKRRYGTIHWGSSNHTGGNIHW*

>peptide 3 (34 aa)
MRDTSIMGIDGADNRTLQHVWSFGDGAESVIPLI*

Sequence

>CNT30370658
CTCGCTCTCTCCGCTGTATTCGGATCGAGCGCTAGCTACCGGCGACTCGAAGCGGAGGTACGGTACGATCCATTGGGGATCGAGCAACCACACCGGCGGC
AACATCCATTGGTGATTTGCTGGGATGCGGCGACAATATTCATCTGCAGCAACATGGCGTTCCCAGGCGGTGCGGCCCTTGTGGTGACGGTATCACGGCA
TCGATCCATCGGTGGCCCGTGCGGTGACGCTGTCTACGCGGAGGGGGCGGTGGCTTCACCTTGGCTGACCGATCGAAGCTAGCGCCGGTGACCTTAGTGC
CCGTGCAACGATCAAGATGCGAGACACATCTATCATGGGCATAGATGGTGCTGACAACAGAACACTCCAGCATGTATGGTCGTTTGGCGACGGCGCTGAG
TCCGTGATTCCGTTGATCTAGCAAGCTGGCACATTAATACTCGTTTCCCTCTCCGGCGCGTGTTTGGCGTGATCCCATCGATGCTAACCGATTTTGTTAG
CCTGCATGTAGAATTGTCTATTCAGAATTCAGTGCACTTCTAGCGTATTTCATTCATTTAGCTTTATTCAGAATGCAGCAACCCGATACTTTACCAGTGA
TTGACGACACTTCTTTATCAATCATTGACTGATACAGTTTATTCAAAATTAG