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Detailed information on CNT30370517


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Oryza glumipatulaSetaria viridis24.0552.8697.5120forward
CNT30513024Oryza glumipatulaJuglans regia26.6517.8583.46133forward
CNT30371693Oryza glumipatulaArabidopsis thaliana21.0419.3486.67105forward
CNT30306600Oryza glumipatulaTriticum aestivum17.8428.0896.6389forward
CNT30384863Oryza glumipatulaTriticum turgidum22.6511.190.27113reverse complement
CNT3085000Oryza glumipatulaVigna radiata42.487.5589.15212forward
CNT30554195Oryza glumipatulaOryza glaberrima62.5310.2499.68312forward
CNT30254428Oryza glumipatulaAvena sativa41.4838.5596.14207forward
CNT30669382Oryza glumipatulaTriticum dicoccoides45.2937.9295.58226forward
CNT3060118Oryza glumipatulaArabidopsis lyrata21.0435.7190.48105forward
CNT30141866Oryza glumipatulaLolium perenne43.6935.8695.41218forward
CNT30347540Oryza glumipatulaEragrostis tef44.2918.6896.83221forward
CNT30368840Oryza glumipatulaSorghum bicolor41.4857.6697.58207forward
CNT30571602Oryza glumipatulaVitis vinifera28.8613.0688.89144forward
CNT30705067Oryza glumipatulaPrunus avium40.8820.9282.84204forward
CNT30116955Oryza glumipatulaOryza nivara78.3649.5698.98391forward
CNT30111719Oryza glumipatulaFicus carica41.8823.1284.21209forward

Expression of CNT30370517

Peptides detected in this lncRNA

>peptide 1 (70 aa)
WYGVSGGLRQPNGDLKAVVVGDLLHEAVDLGLGRGERGGGSSCARCACGWRSRRRSARRPCSPSRSPSSP*

>peptide 2 (96 aa)
MRLLTSVSGVESEAEVVHVLGALADGVLGVDPRAVHVPLLDRLLHLELLLLLLLLALARLPLQRLGGELEVEDLGHQLLRVPHRCRRRASPDRGFG*

>peptide 3 (63 aa)
MFPFSIAFFTLSFCSFSSFSHLRACRCSDLEVNLRSKIWVISFSGFPIAAADELAPIVDLARV*

Sequence

>CNT30370517
CTGGTATGGCGTGAGCGGCGGCCTGCGGCAACCCAACGGAGACCTCAAGGCCGTAGTCGTCGGCGACTTGCTGCATGAGGCTGTTGACCTCGGTCTCGGG
CGTGGAGAGCGAGGCGGAGGTAGTTCATGTGCTCGGTGCGCTTGCGGATGGCGTTCTCGGCGTAGATCCGCGCGCCGTCCATGTTCCCCTTCTCGATCGC
CTTCTTCACCTTGAGCTTCTGCTCCTTCTCCTCCTTCTCGCACTTGCGCGCCTGCCGCTGCAGCGACTTGGAGGTGAACTTGAGGTCGAAGATCTGGGTC
ATCAGCTTCTCCGGGTTCCCCATCGCTGCCGCCGACGAGCTAGCCCCGATCGTGGATTTGGCTAGGGTTTGACGAGGAGGAAGAGGAAAGGCAGATCGGA
TTGGGGGATTTGGGAACGCGTCGTACTTGCGAGGAGACGAGACGCGAATTGGGAATTTTTATTATTGGGGAGATGGGATTCGGTTCCGTTTGATTTGAT