Detailed information on CNT30370349


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382729Oryza glumipatulaTriticum turgidum10.4425.3581.48162reverse complement
CNT30553755Oryza glumipatulaOryza glaberrima78.7489.3999.841222forward
CNT3067525Oryza glumipatulaLeersia perrieri45.5584.2785.86707reverse complement
CNT30596287Oryza glumipatulaOryza meridionalis20.360.4697.78315forward
CNT30576374Oryza glumipatulaOryza barthii5041.1599.74776reverse complement

Expression of CNT30370349

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSCLLIIWHMFFGKVKHGNMPCSNAALVSIYLFTLKFHASSCDKNTCNQ

>peptide 2 (49 aa)
MVRRQLSQPISTHPRPLTLPWDEISGMTSCCCSDLCYWRFCRSQFDDGC*

>peptide 3 (29 aa)
MRPPLRTPRCSTPCPCQHWQRKIKEQISW*

>peptide 4 (71 aa)
MVTERRRGGVQMSISTKAMIAATRSPMRLNAASSSDSSVQHTLPMSALAEKDQRTNLLVIGGMLKQDESGS*

>peptide 5 (55 aa)
MFALWRLLWPSGWGITFRSPMVPFPFNSFFIFQDGEETAQPANQHPPKATNTALG*

Sequence

>CNT30370349
TTCAGACTGACAGTAGACTTTTGAGATCTGCCCGGAAGTTTAGGATCTAAGTGAAACCATTTAATATTCCTACTTGTTTCAGTGCTTTTCTATTGGAAGT
TACACTAGGCCACAAAAAATGTGCATCCTTTATGGGGATCACTAAAGAAACACTTAATGACTTAACAGCAAGGGAAGAACAATAAATCTGTCTTTTTTGC
TAATTACATTTTATCTGAGGATAAACCAGTTCCTGTGCTTCTGTGTCGTGATCACGTCAAAATCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGTAGGAGGTTAGCAAGTCATATCATACATTTTACAGATTTGACAAGCATCTATATATTTCCAAAGCTATCAATTCAGGCTAAAGATGAAGAGAC
TATTATACCAATAAACATGACTTACAATAGGATGCATTACAATTAAGCAATTATTTAACTTGAAAAATCAGGAGCCAATGCCTTGCCTTCCTGCTTTCTC
CAAGAACCTTCACCCTGCACATCTTTGATTCTTCAGAGAAGCAATCAAGCTTCTCCCATCAGAGGACTCACAGTCCTGCAGGTACTCCTCCACCTCAGCA
GCAAGGGTAGATGGTGACTGAGCGCCGCCGTGGCGGTGTGCAGATGAGCATCAGCACCAAGGCGATGATCGCAGCGACGAGAAGCCCCATGAGGTTGAAT
GCGGCCTCCTCTTCGGACTCCTCGGTGCAGCACACCTTGCCCATGTCAGCACTGGCAGAGAAAGATCAAAGAACAAATCTCTTGGTGATTGGTGGTATGT
TGAAGCAAGATGAAAGTGGCAGCTAGAAGAAGAAGGCTTCTTGGCAAAGGTGTGTGAGCTTCCTCTGAAACTCTGGTTGTGATGTTTGCTTTATGGAGAC
TGCTATGGCCAAGTGGTTGGGGCATCACTTTCAGGTCTCCCATGGTGCCATTCCCTTTTAATTCATTTTTCATCTTCCAAGATGGTGAGGAGACAGCTCA
GCCAGCCAATCAGCACCCACCCAAGGCCACTAACACTGCCCTGGGATGAAATTTCTGGGATGACCAGTTGCTGCTGCTCAGATTTGTGCTACTGGCGATT
TTGTCGCAGTCAATTCGATGATGGTTGCTGATGGTGAGATGAGATGAAAACTACACTGGATGCACTGATGATACTCCTGGTGAACTTGCAAAAGTTCAGA
GATCTTACTTTCTGAAGGCTGTTGAAAAGTAATTCACTTCTTCAGTGATTGAAGTCCTGGAAACAAAACAAGGTTGATTAGCATTTGCTGATGGCTACAT
TTCGTTCCCTGTGAAACACATCTCATTCAGGTTCAGCATTTGAGTTTAGGTAGTAGCATACATTGGGTGACACATGTTGTGTGTCGGTGTGACTTAGACC
TGCAATGAGTTGCCTTTTAATAATCTGGCACATGTTTTTCGGGAAGGTGAAGCATGGCAACATGCCTTGTTCCAATGCAGCTCTTGTATCTATCTATTTA
TTTACTCTGAAATTCCATGCATCTTCTTGTGACAAGAATACATGCAATCAAG