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Detailed information on CNT30370294


BLAST search results

BLAST vs Swiss-Prot:
sp|Q94HW2|POLR1_ARATH, E-value = 2e-24

BLAST vs NONCODE:
NONORUT007093, E-value = 7e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30443963Oryza glumipatulaAegilops tauschii44.7317.7185.98378reverse complement
CNT30595638Oryza glumipatulaOryza meridionalis46.0426.8595.63389forward
CNT30578242Oryza glumipatulaOryza barthii46.6341.9196.7394forward
CNT30117499Oryza glumipatulaOryza nivara42.49100.2897.21359forward

Expression of CNT30370294

Peptides detected in this lncRNA

>peptide 1 (59 aa)
AFLVRTSMVTLIEKRMALRVGQFSGFLHSQTQKPYPPEGGWIHIYSHSWLLAYCCTLLV*

>peptide 2 (60 aa)
MSSTVPVSLPRRSLSSRASQSAWVEAAEAAMYSASQLDRATTCCLTDCQLTRHSPRKKRIP

>peptide 3 (51 aa)
WPFLLELQWLLSLRRGWHSEWGNFLVFFIHKLKSHTHPREVGYIYIAIAGC*

Sequence

>CNT30370294
TGGCCTTTCTTGTTAGAACTTCAATGGTTACTCTCATTGAGAAGAGGATGGCACTCAGAGTGGGGCAATTTTCTGGTTTTCTTCATTCACAAACTCAAAA
GCCATACCCACCCGAGGGAGGTTGGATACATATATATAGCCATAGCTGGCTGCTAGCCTATTGCTGCACCCTCCTAGTCTAAAATTCGAAATTTGAATGG
GATGCTGTCCTAGAGGGCATCCAAACTGAATAAAGCATAAAGGAGGCATAAAGGAGATGCTAATTGCTGCTGTCCTACTAGCCGCAGCTGTCCTAGCAAC
TGAAAAAATATGCTAGAGGGGTAGATGCTGTCCTGAAAAGGTGAAACTACCCAAAAGCAAAAAGAAGAATCACGACCGAGGACCACAAAGACTTATCCAA
CATTCTCCCCCTAAGTCTTGTGCATCATCTTGTGGGGAAGTTGGGCCATCCCGATCCTGGAGCAGAGCTCGAGGAACTTGATCCTCCCAAGAGGCTTGGT
GAGCAAGTCCGCAAGCTGGTCCTTGGTGTTGATGTAGCTCGCCTTGATGCTCCCTCCCTCCAAGTAGCTTCGGATGAAGTGGTACCTCACCCGGATGTGC
TTGCTCCGTTCGTGAAAAACGGGGTTCTTTGCCAGGGCCAGAGCGGACTTGCTATCCACCATGAGCTCCACCGTTCCAGTGTCTCTGCCGAGGAGATCAC
TAAGCAGTCGAGCAAGCCAGAGCGCCTGGGTCGAAGCGGCGGAGGCCGCCATGTACTCGGCCTCGCAGCTGGACAGGGCCACCACCTGCTGCTTGACCGA
CTGCCAGCTAACGAGGCACTCGCCGAGGAAGAAGAGAATCCCGCT