« Back to Oryza glumipatula search


Detailed information on CNT30370125


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005049, E-value = 2e-112

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696068Oryza glumipatulaOryza sativa64.8422.6899.56225forward
CNT30578376Oryza glumipatulaOryza barthii65.9935.6797.82229forward
CNT30117593Oryza glumipatulaOryza nivara64.8422.5296.89225forward

Expression of CNT30370125

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MMDLYIKLSVCVPRLIPGRGFYAQISSEITSEFPGVTMVGKEKGTIIYLCEESYTLSDQENQLRSKAKL*

Sequence

>CNT30370125
CGTTTGGCTTATACCCCAGTTGAGCTGCCTGTGGGAGTGGAGCTGAAGCCATCGCTAGACCGTTAATTCCGCTGCTGTTTTTCTTTTCTTTTGTAAGTAT
GTAACGTTATTATTATGATGGATTTGTATATTAAATTGTCAGTTTGTGTACCTCGGCTGATTCCTGGACGAGGATTTTATGCACAAATTAGTTCGGAAAT
TACTAGTGAATTTCCGGGCGTGACAATGGTAGGAAAAGAAAAGGGCACAATCATATACCTTTGTGAGGAATCATACACCTTGAGTGATCAAGAGAATCAA
TTGAGGAGCAAAGCAAAGTTATAATTTTGTGTTACTTGAAAAAAAAA