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Detailed information on CNT30370044


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108723Oryza glumipatulaOryza longistaminata43.4864.3793.73654forward
CNT30576256Oryza glumipatulaOryza barthii27.8632.8198.81419forward
CNT30116531Oryza glumipatulaOryza nivara27.5931.3299.28415forward
CNT30603969Oryza glumipatulaOryza punctata37.142.1888.89558forward

Expression of CNT30370044

Peptides detected in this lncRNA

>peptide 1 (78 aa)
GGACFALGVLSLSSSTKSTTTTTRSVASDQIQRKIHHRLPPLAAVVVFASFSRSPPSLRLDRIAPIAVSSSMASAPPP*

>peptide 2 (81 aa)
GAPALLWGFSLSLHLQRAPPPPHAPSHPTKSSAKSIIASPPSRRSSSSRRSLGAPPRLDWIGSRQSRSRPPWHLPPPLRFP*

>peptide 3 (58 aa)
WGRLLCFGGSLSLFIYKEHHHHHTLRRIRPNPAQNPSSPPPPRGGRRLRVVLSEPPLA*

>peptide 4 (47 aa)
MTTTLGSWWPLAPRLASPIAAPVGCSPSRYACVDFDSVPPSDPPLFI*

>peptide 5 (51 aa)
MKTESRNAESRFAKSSNINMLCIPIETCWVINSLVFFLKKGNSITLDKKTI*

>peptide 6 (43 aa)
MLALILILCRLATRLSSSRVQPSSRLLSCCLKLAASLCQNYWI*

Sequence

>CNT30370044
TGGGGGCGCCTGCTTTGCTTTGGGGGTTCTCTCTCTCTCTTCATCTACAAAGAGCACCACCACCACCACACGCTCCGTCGCATCCGACCAAATCCAGCGC
AAAATCCATCATCGCCTCCCCCCCCTCGCGGCGGTCGTCGTCTTCGCGTCGTTCTCTCGGAGCCCCCCCTCGCTTAGATTGGATAGGATCGCGCCAATCG
CGGTCTCGTCCTCCATGGCATCTGCCCCCCCCCCTTAGATTTCCGTAGGAGGTAGCTAGCTAGCTTGCTGCCGCCCGTCGCATGACCACGACCCTCGGAT
CGTGGTGGCCGTTGGCTCCCCGATTAGCTTCTCCCATTGCCGCTCCTGTAGGCTGTAGCCCCAGCCGATATGCTTGCGTTGATTTTGATTCTGTGCCGCC
TAGCGACCCGCCTCTCTTCATCTAGGGTTCAACCTTCGAGCCGGCTTCTCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAGAACTATTGGATATG
AAAACAGAGTCAAGAAATGCAGAATCCAGGTTTGCCAAAAGCAGCAATATAAATATGTTGTGTATACCCATAGAAACATGCTGGGTTATCAACTCACTAG
TTTTTTTTTTAAAAAAAGGAAACTCAATTACATTAGACAAGAAGACTATTTGAACTGAGGAAGTTATTGTGTATGGTAAAAGAAGTAACAAGAGGCAAAC
AAAGAAATTTGTTGTAAACAAATAAGGGAAGTAGTATTATCTTTCCAGTTTGAAGACAGTTTTTTTTTCCAGATAAGACGATGAGCTACCAACTCTATTG
AATTTGGTACTCCATTATCAGTCCTCGTTTTGCGGGGTGTTACCCCCGTATTGTAAAAAGCTTGTTTGTCTAAGCAAAATGCTTCCAAGTCCCACCAAAG
CTAGATTAACTACAAAGTATCTGCAGAGTGCACAAGTCAGGTAAGTGATGATTATATCATCCTGGTACAAGCTTTATTGCGGTGAAAGATAAGCAGTTAG
TCTGAAATCTGTACAGATCTGTCAGCTGTTACCGAAGCAAAAGGTTCAATGTGAACTTAAAGGATGCAGTACTGATCCTTTTAAGAGGATTTAACACAGA
TTTAACAGGGTGTTCTGTATGCGAGCTGTGATGGGATGGTTCTCTTCAGAAGCATTTTATTTTAACTAAATTCAGAAGCATTTCGATGGCATGAGGACTG
TTCGATTGACAATTTGTATGTACATTTCCACCGTTTACGCAGCTTAGGAATTGGACCATAATTAGTTGTGTACCTGCAAGTTTTGTATACGAATTATCCT
GAAGGGTGTTCGGTGGATTGAATATTGCCCTTTTGGTTGTTTTGCGCATCGTGGATGCGGCTGCTCTACATTTTTCTTATAGGAAATCAGCTTCTGATAA
AAGGGATTATTATCTGTGTGATCTACTGATCGATATTTTACCCCTCTAGCTGAGTTTATTAAGCCAATTGATTATCGAGTGGGATCCTCTCAACGACACA
TGAG