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Detailed information on CNT30370011


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553531Oryza glumipatulaOryza glaberrima31.5522.4798.97195forward
CNT30576046Oryza glumipatulaOryza barthii88.8344.1396.36549forward
CNT30116435Oryza glumipatulaOryza nivara88.6744.5996.35548forward
CNT30604834Oryza glumipatulaOryza punctata23.39.0986.81144forward

Expression of CNT30370011

Peptides detected in this lncRNA

>peptide 1 (56 aa)
RSHLFFSVCLPPHSSPLLPLNRPDGYPPVAAACGGGRRREAASGEGSSGRRVVAGW*

>peptide 2 (29 aa)
LVLISSSLFVFLLIHLPFFLSTDLTATRR*

Sequence

>CNT30370011
CTCGTTCTCATCTCTTCTTCTCTGTTTGTCTTCCTCCTCATTCATCTCCCCTTCTTCCTCTCAACCGACCTGACGGCTACCCGCCGGTAGCAGCGGCGTG
CGGAGGTGGCAGGCGGCGGGAGGCGGCCTCTGGTGAAGGCAGCAGCGGCAGGAGGGTGGTGGCGGGATGGTAGGCTGCGGCGCCCTCCGGTGAAGGCGGC
AGCGACGACCGCACCCTCCCCTCCACCAGATCCCGGGGGGAGGGGAGGCGGTGACCCGGCGGCGGCGGCCGTGGGTAGCCGTGTCGGCAGTGGTGGTGGA
GACTGACGCAGGCGAGGTAGCGACCAACGGCAGCCGCCGGATCCGGCAACAACGGTGGCGCTGCTTGTGGAGGAGGCTGGCCCAGGCGAGGCGGCGACCG
GTCGACTAGAGACTTGTGTGTAGAGATCTGGTGTGGAGAGTGTTGCCTCGAGTTACCGTCAAGGTTAAAGGCAAGTGCACGACAAACTAATTATGTGATT
CATGGATTGTTTGCTCTATCTATTTATTTTCATTATTTTCTATGTGATATGTGACTCTTATGTTCATGCGATTGTTCATGCCATTTAGATTTCAAGTTTA
TCTAATATTTAAAGGAAG