« Back to Oryza glumipatula search


Detailed information on CNT30369917


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10MW3|PDC2_ORYSJ, E-value = 3e-133

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3021436Oryza glumipatulaCitrullus lanatus13.8826.0986.984forward
CNT30562763Oryza glumipatulaActinidia chinensis26.6135.0881.37161forward
CNT30238282Oryza glumipatulaBrassica oleracea21.4924.2182.31130forward
CNT30553156Oryza glumipatulaOryza glaberrima95.8791.6396.03580forward
CNT30658371Oryza glumipatulaTriticum dicoccoides42.1539.9782.35255forward
CNT30128751Oryza glumipatulaCorymbia citriodora30.9136.7481.82187forward
CNT30362074Oryza glumipatulaSorghum bicolor47.4450.9886.06287forward
CNT30706321Oryza glumipatulaPrunus avium31.0734.0680.32188forward
CNT3026328Oryza glumipatulaPopulus trichocarpa32.5637.3178.68197forward
CNT30100594Oryza glumipatulaOryza rufipogon36.5359.7399.1221forward
CNT30113754Oryza glumipatulaFicus carica33.0648.981.5200forward

Expression of CNT30369917

Peptides detected in this lncRNA

>peptide 1 (63 aa)
LCAITSMKHSTVTVQHLLDVLEEHIDAQRLIRLALQRLALRHEDPLVVLVSSGVLVDALSQLR*

>peptide 2 (29 aa)
MTHPNAGPFPTMTRSGCTIMALSFLRRKE*

Sequence

>CNT30369917
CTTGTGCGCGATCACCTCAATGAAGCACAGCACTGTCACTGTTCAGCATCTTCTGGACGTGCTTGAAGAGCACATTGACGCGCAGCGGCTCATTCGGCTC
GCTCTCCAGCGGCTGGCCCTCAGGCACGAAGATCCTCTTGTAGTTCTCGTAAGCAGTGGTGTTCTTGTTGACGCGCTTAGCCAGCTCAGATAAGAACTCC
TTCATCATGACGCACCCAAACGCCGGGCCATTCCCGACGATGACACGCTCCGGTTGCACAATTATGGCCTTGTCCTTCTTGAGGAGGAAGGAGTAGCCAA
CAGAGCTGTAGTCATTGAAGATTGGCCCTGCGAAGAGGTAGGCGTCGGCCGACTCGACGATCTCGGCACAGAAGGCCGTGCTGACGGCACCCCAGTAGGT
GCCGATGAAGTGGGGGTGCGTCTCCGGCACGAGCCCCTTGGCCGACGGCATCACCGCGTAGGCGTAGCCACTGGCATCAACAAGGTCGACGAAGGCCTTC
CCTGCCTTTGCCACACGCAGCTTGGGGCCGCCAACGAGCACCGGCTTCACCGCCTTGTTCAGGAACTCGACAGTGGCCTCCACCGCAGCCTCCAGACCCA
TCTTG