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Detailed information on CNT30369867


BLAST search results

BLAST vs Swiss-Prot:
sp|Q570U6|EF4L4_ARATH, E-value = 1e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691749Oryza glumipatulaOryza sativa55.8670.8899.43348forward
CNT30444272Oryza glumipatulaSaccharum spontaneum15.7325.0696.9498forward
CNT30361868Oryza glumipatulaSorghum bicolor17.0120.3896.23106forward
CNT30596805Oryza glumipatulaOryza meridionalis14.7723.4796.7492reverse complement
CNT30103544Oryza glumipatulaOryza rufipogon22.319.2296.4139forward
CNT30579013Oryza glumipatulaEchinochloa crusgalli20.2220.196.83126forward
CNT30116125Oryza glumipatulaOryza nivara40.6168.9499.6253forward
CNT30550749Oryza glumipatulaOryza brachyantha28.2534.4495.45176forward

Expression of CNT30369867

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MMFLGIQRSAHSLVLALLHQNPYNSSSYQLQQDETTATRKNRR*

>peptide 2 (40 aa)
MRMVLVQSRWVDLTRLWPAWRTAVPTEAPSEAAKREERSA*

Sequence

>CNT30369867
ATGATGTTTTTGGGAATTCAGAGAAGTGCTCACTCTCTTGTATTGGCATTGTTGCATCAAAATCCATATAATAGCTCATCATATCAGCTACAACAAGATG
AAACAACAGCTACAAGAAAGAACCGAAGATGATTGTACTGCCTCCGTTTTAGGTTATAAGACTTTCTAGCATTACCCACATTCATACAGATGTTAATGAA
TCTAGGCACACATATATGTCTAAATTCATTAACATATATATGAATGTAGGCAAATGCTAGAAAGTCTTATAATATGAAACATAGGGAGTAGTTGTGAGGG
GGCGTTAATTGCTCATATGTAGATTTATAGATTATAGCTAGATATACAAGCAAGCAAGAGCTCGATCTTTAAGCTAAGCTAGCCGAAATTGGAATTGGAA
TTGGAGAATTGGAGGTGGTTAATAGAGAAAATGAGAATGGTTCTTGTTCAGTCGAGGTGGGTGGACCTGACACGCTTGTGGCCGGCGTGGCGGACGGCGG
TGCCGACGGAGGCGCCCTCGGAGGCGGCGAAGAGGGAGGAGAGGTCGGCGTAGAGGTCGACGACGCGGCGGATGTTGTTGTTGAGCTCGCGGATGAGGCC
GACGTTGCGGGAGAGGTCGCCGG