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Detailed information on CNT30369763


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692341Oryza glumipatulaOryza sativa9.9223.6210060forward
CNT30595947Oryza glumipatulaOryza meridionalis82.6469.7498.2500forward
CNT30100799Oryza glumipatulaOryza rufipogon82.4827.6599.8499forward
CNT30575483Oryza glumipatulaOryza barthii76.3647.1999.13462forward

Expression of CNT30369763

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MSFEFVLRWRGRGPAATCARGRRGGSATGTWAWTAAAAAPKRRRGWSRC*

>peptide 2 (52 aa)
YITYVDFKCPTKQATSTFMQQQQTIIHIQPRFSFTVEGVHTYIIHNDLDQSY*

>peptide 3 (42 aa)
TSHMLILSVQQNKLRVLLCNNNRPSFIFSHGLALPWKEYTLT*

>peptide 4 (44 aa)
MARTRPGSDLCARSARRLCHRHLGLDGGGGGAEEEAWLESVLKYS

>peptide 5 (41 aa)
MLLVTLLIQLSDKQAKATLLNWLASCSSGSGINHANLKQLS*

Sequence

>CNT30369763
TACATCACATATGTTGATTTTAAGTGTCCAACAAAACAAGCTACGAGTACTTTTATGCAACAACAACAGACCATCATTCATATTCAGCCACGGTTTAGCT
TTACCGTGGAAGGAGTACACACTTACATAATCCATAATGACTTGGACCAAAGCTACTGATGCTACTGGTCACACTGCTGATTCAGCTTTCAGACAAGCAA
GCAAAAGCAACACTACTTAACTGGCTGGCTAGTTGCAGTAGTGGTAGTGGGATTAATCACGCAAACCTGAAGCAGCTCAGTTGAGCTGAGCGGCTTTAGC
CCATAAGCAATAAACTATAGCTAGTGACTTCACTCAGTGCGTGCGCTTCCGTTTTTATTTATTTAGCTAATCACTATTGATAAGTATCGCTTGATTTTTT
TATATGTGATTAATTTAGGGAAGCTTTTAGCGCCTTGAGTTCTTGATGTCTTTTGAGTTCGTTCTTAGATGGCGAGGACGAGGCCCGGCAGCGACTTGTG
CGCGCGGTCGGCGCGGCGGCTCTGCCACAGGCACTTGGGCTTGGACGGCGGCGGCGGCGGCGCCGAAGAGGAGGCGTGGTTGGAGTCGGTGTTGAAGTAC
TCCCT