Detailed information on CNT30369691


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691495Oryza glumipatulaOryza sativa86.7756.4199.221161forward
CNT30587177Oryza glumipatulaMusa acuminata5.1621.0485.5169forward
CNT30552873Oryza glumipatulaOryza glaberrima86.6278.4799.651159forward
CNT30595765Oryza glumipatulaOryza meridionalis61.7367.4898.18826forward
CNT30575108Oryza glumipatulaOryza barthii83.4166.4799.731116forward
CNT30603681Oryza glumipatulaOryza punctata43.8741.0289.61587forward

Expression of CNT30369691

Peptides detected in this lncRNA

>peptide 1 (60 aa)
SRPAQISLRLSSSAGSDMCRGFCFASTATCRATGTRARARPRAVLTPRPPPRSGARSSPF*

>peptide 2 (45 aa)
MPFSASSRRPLPSTVPLRRARGFSDSCKGTVTSLWQQLHILQENL*

>peptide 3 (28 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYE

>peptide 4 (74 aa)
MKIVPSVLIMKAAHVNCLVHPDHLLLFTLIRLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRPVTILSSEL*

>peptide 5 (80 aa)
IAASSDISSPLLLRRERHVSRLLLRFHGHMPRHGHPRARAPARRPHAASAAQIRRTLLPLLSRHRRHRRARRRGAAAPIS*

>peptide 6 (85 aa)
DRGQLRYLFASPPPPGATCVAAFASLPRPHAAPRAPARARARAPSSRRVRRPDPAHAPPPFEPPSPAPPRATARRSRTDLVNSPP*

Sequence

>CNT30369691
GATCGCGGCCAGCTCAGATATCTCTTCGCCTCTCCTCCTCCGCCGGGAGCGACATGTGTCGCGGCTTTTGCTTCGCTTCCACGGCCACATGCCGCGCCAC
GGGCACCCGCGCGCGCGCGCGCCCGCGCGCCGTCCTCACGCCGCGTCCGCCGCCCAGATCCGGCGCACGCTCCTCCCCCTTTTGAGCCGCCATCGCCGGC
ACCGCCGCGCGCGACGGCGCGGCGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCCAAATCGCAA
TGCCTTTCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGTTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTT
GTGGCAGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTG
CCTCCCTTTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAA
ACACAATGATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACC
AGGCAATGGCAAATGAACTCATCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGGTAAGGAAGTCAAACA
TCTAATATGTATGAAAATTGTTCCTAGTGTTCTTATAATGAAGGCTGCACATGTAAACTGTTTAGTCCATCCTGATCATCTATTGTTGTTTACTCTGATC
AGATTACGTCGTCTCTACATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCA
TGAGGCCAGTCACAATTCTTAGTAGTGAATTATGAATTTCTAAATGCATTATGTTAGTTTCATGGCTTGATCCTTGGTTTCTTTGTTTTGTAGGTTTGCA
GGAATTTCTCTAGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTA
GCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGA
CTGTTCTCAAGCAAATGAAAAATTCCAGCTTTTATGAA