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Detailed information on CNT30369559


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002197, E-value = 2e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694181Oryza glumipatulaOryza sativa53.9926.2891.44257forward
CNT30552962Oryza glumipatulaOryza glaberrima53.9960.4792.22257forward
CNT30109442Oryza glumipatulaOryza longistaminata36.3463.3794.22173forward
CNT30576966Oryza glumipatulaOryza barthii55.6715.0192.83265reverse complement
CNT30115470Oryza glumipatulaOryza nivara53.9924.5593.39257forward

Expression of CNT30369559

Peptides detected in this lncRNA

>peptide 1 (33 aa)
GDGPHRGRQKGVNRRGEAEQEKRGGSAGSEEKE*

>peptide 2 (32 aa)
MCQMVAFPRSRLRPCRRGYLWSGVPAAVQVKA*

>peptide 3 (29 aa)
RRWSSQRKTEGSEPKRRGRAREERRQCRQ*

Sequence

>CNT30369559
AGGAGATGGTCCTCACAGAGGAAGACAGAAGGGAGTGAACCGAAGAGGAGAGGCAGAGCAAGAGAAGAGAGGAGGCAGTGCAGGCAGTGAAGAGAAGGAA
TAAAAGACACGTAGTTATGAACGAACAAAGAAATGCAGTAGTACGAAGAACTTTGAAATTGGGACTTTTATATGAGCAAATTGGTTGAAAAGAAGAAGGT
AAGACAAGAGTTTGAATATGTGTCAGATGGTGGCTTTTCCGAGGAGTAGGCTTCGTCCGTGCCGTCGAGGATACCTGTGGAGTGGTGTTCCCGCTGCAGT
CCAAGTCAAGGCTTAGCTCCAGTTATCTTTTAATTTTCCGCTGCATTTATGTAAGACTTTTATGATGTTTGTAAGACGTGGATCTGTATGTCGACTTTGT
CGTTTGTGTACCACGGCCGGTCCTGAACGGGGGTTTTAATGCACATTCTACTTGGAATTCTATTCGGGAATTTTTG