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Detailed information on CNT30369558


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7FMW4|AB38G_ORYSJ, E-value = 8e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552653Oryza glumipatulaOryza glaberrima97.8192.5999.84625forward
CNT30100172Oryza glumipatulaOryza rufipogon98.2860.7499.68628forward
CNT30575264Oryza glumipatulaOryza barthii95.6292.7299.84611forward
CNT30116040Oryza glumipatulaOryza nivara46.1710099.66295forward

Expression of CNT30369558

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MAYLVQCHNTEECTKKTDHQKVNSGNLFQESAAQHFLRAEMILTVKPFKEQNEEDVEEHDVSK*

>peptide 2 (54 aa)
LHTGRLPMLAYLRHIHRVSDIVEGDRQRSKWKYHSSLPGVSSCNLSSSCICYTC*

>peptide 3 (66 aa)
MKRMLKSMMYPSNAPTPIQYQFASTKMPRTLRTWTPSVSLLCVGSTTCARIRLLLSYLNPNLDCQV*

Sequence

>CNT30369558
GTTACACACAGGGAGGCTTCCAATGCTTGCTTACCTGAGGCATATCCACAGAGTATCTGATATTGTCGAAGGTGATCGACAGAGGAGTAAATGGAAGTAC
CATTCCTCTCTTCCTGGTGTCAGCTCCTGTAATCTCTCCTCTTCCTGCATTTGCTATACTTGTTAAAAGGACACAACAAAATGGCATATCTTGTTCAATG
CCATAATACAGAGGAATGTACTAAAAAGACTGACCATCAGAAGGTGAATTCTGGGAATCTGTTCCAAGAGTCAGCAGCTCAACATTTTCTCCGAGCTGAG
ATGATACTCACGGTCAAGCCATTCAAGGAACAGAATGAAGAGGATGTTGAAGAGCATGATGTATCCAAGTAATGCGCCAACGCCAATCCAGTACCAGTTT
GCATCGACAAAGATGCCACGTACCTTAAGGACTTGGACACCAAGCGTGTCGTTGCTTTGTGTCGGATCAACAACCTGCGCAAGGATTAGGTTGCTTCTGA
GTTATCTAAATCCAAACTTAGATTGTCAGGTTTGAGTTGGTGCAGGAGACACTGCATTACCTTGTTCCAGCTGTGGCCAAGGAACTCATTAACTGCTATG
GCATTCTGTGCATACATCAGAGGAGAGGACCAGTAGCCC