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Detailed information on CNT30369472


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694654Oryza glumipatulaOryza sativa96.1595.9899.64549forward
CNT30554473Oryza glumipatulaOryza glaberrima96.3287.5899.27550forward
CNT30102681Oryza glumipatulaOryza rufipogon94.0595.3899.63537forward
CNT30577129Oryza glumipatulaOryza barthii93.8796.499.25536forward
CNT30117222Oryza glumipatulaOryza nivara94.0596.0699.07537forward

Expression of CNT30369472

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MIMSPDNGEPFQNFLVELSSLMKFKEIYRAKRSAFRPNWE*

>peptide 2 (45 aa)
ERDKASTLSMNAADSSLLAAPPTPPSRGQYRLRLLIAHLIASVEN*

Sequence

>CNT30369472
GAGAGAGACAAGGCCTCAACCTTATCCATGAACGCGGCCGATAGCTCGCTGCTCGCTGCCCCTCCCACGCCTCCCTCGCGCGGACAGTATAGGCTAAGAT
TATTGATTGCCCATTTGATTGCATCTGTGGAGAACTGAAGATATCCAGCTGAATTTTCTTGTGGACATAACAATCAAAAGCATGAGAGGAATCGAACAAA
GATTGAATTTGTGTTTTTGAGAAGCCTACTTAGGTCAGCCACATCACTCCGACGGATCACATTGGCTTTCCATGGTATGATTATGAGTCCTGACAATGGG
GAGCCATTCCAGAACTTCCTGGTTGAACTATCCAGCCTGATGAAATTCAAGGAAATTTACCGCGCTAAGAGATCCGCATTCAGACCAAACTGGGAGTAAG
CGTGATCATTCAGAAACAGCGTGCTACAGATCAACACCAAAATTCCTAAATTGCATGTCCTTGCCAAAATTGTAATAGACAATGTGTAATGCTTGTATTA
TATTTTTCTGCCTTCTAATATATTCGACAATACTCATGCCGCTTTCATATAAAAAAAACCACTAAAATTCC