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Detailed information on CNT30369297


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000177, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552286Oryza glumipatulaOryza glaberrima10091.6599.36626forward
CNT3066724Oryza glumipatulaLeersia perrieri20.7744.5287.69130reverse complement
CNT30595465Oryza glumipatulaOryza meridionalis90.194.6395.21564forward
CNT30106043Oryza glumipatulaOryza longistaminata46.0181.1397.92288forward
CNT3099917Oryza glumipatulaOryza rufipogon10091.6599.36626forward
CNT30574627Oryza glumipatulaOryza barthii92.9799.6699.31582forward
CNT30115788Oryza glumipatulaOryza nivara10097.5198.72626forward

Expression of CNT30369297

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MDPAERVVKAAWYKGAVVTHRPKPVSPIVNQSKNKNKQAKKPKPAAPSKK*

>peptide 2 (35 aa)
MYVCCENKMLEILYSVMFILTSCLKFGNKLFLETKA

Sequence

>CNT30369297
CCAAGATCTAATCAAGAATCTCAGCGCATTTTCCGTTGTCAGTTCGGCCATTAAGCCCCATATATAAGCCTCCTGATAATATCAGTAGGAGAAACAGGCC
ATTGTGGATATATACAAGCACAGAAGAACAAGTAAATATAATCGACAGAGAACTGAAGCCGACGAGGTCTCGACAGGCGAAATATGGATCCTGCAGAGAG
AGTGGTGAAGGCGGCATGGTACAAGGGCGCTGTCGTCACTCATAGGCCGAAGCCTGTTTCGCCTATCGTTAACCAGAGCAAGAACAAGAACAAGCAAGCC
AAGAAGCCCAAACCAGCTGCACCCAGCAAGAAGTGATAAACTTAACTGGCTGCCTGCCTCTACTACACAGTATGTATGCAAACCGAAAGACTGGCTAATT
AGGGGGTTTAATCTTCAGGATTCAGTTCAGGTTTGAGCTGAACACTGAAGAAGTGAAGAGTACTTGGATACAGTTAATTTTACCTGTTCAAACTTCAAAC
AGTCCTACGGGATGCCGGATGTATGTGTGTTGTGAGAATAAAATGCTTGAGATACTATACTCTGTGATGTTCATATTGACCTCCTGCTTGAAATTTGGGA
ATAAATTATTTCTGGAAACAAAGGCA