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Detailed information on CNT30368840


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84VG1|CHMP1_ORYSJ, E-value = 2e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673796Sorghum bicolorSetaria viridis31.249.34100112forward
CNT30513024Sorghum bicolorJuglans regia33.1515.9784.03119forward
CNT30371693Sorghum bicolorArabidopsis thaliana25.6316.9485.8792forward
CNT30306600Sorghum bicolorTriticum aestivum22.5625.5595.0681forward
CNT30384863Sorghum bicolorTriticum turgidum29.2510.3190.48105reverse complement
CNT3085000Sorghum bicolorVigna radiata57.667.3788.41207forward
CNT30554195Sorghum bicolorOryza glaberrima57.666.7997.58207forward
CNT30254428Sorghum bicolorAvena sativa58.2238.9296.65209forward
CNT30669382Sorghum bicolorTriticum dicoccoides57.6634.7395.65207forward
CNT3060118Sorghum bicolorArabidopsis lyrata26.7432.6588.5496forward
CNT30141866Sorghum bicolorLolium perenne57.3833.8896.12206forward
CNT30347540Sorghum bicolorEragrostis tef57.6617.598.07207forward
CNT30370517Sorghum bicolorOryza glumipatula57.6641.4897.58207forward
CNT30571602Sorghum bicolorVitis vinifera58.519.0485.24210forward
CNT30705067Sorghum bicolorPrunus avium57.3821.1383.01206forward
CNT30116955Sorghum bicolorOryza nivara57.6626.2497.58207forward
CNT30111719Sorghum bicolorFicus carica58.2223.1283.73209forward

Expression of CNT30368840

Peptides detected in this lncRNA

>peptide 1 (91 aa)
GQVEVVHVLGALADGVLGVDAGAVHVALLDRLLHLELLLLLLLLALARLPLQRLGGELEVEDLVHQLLRVAHGRRRREGGTLELGMDLGFG*

>peptide 2 (62 aa)
MRAPSMLPFSIAFFTLSFCSFSSFSHLRACRCSDLEVNLRSKIWFISFSGLPMVVAGERGGR*

>peptide 3 (35 aa)
GAGRGSSCARCACGWRSRRRCGRRPCCPSRSPSSP*

Sequence

>CNT30368840
GGGGCAGGTAGAGGTAGTTCATGTGCTCGGTGCGCTTGCGGATGGCGTTCTCGGCGTAGATGCGGGCGCCGTCCATGTTGCCCTTCTCGATCGCCTTCTT
CACCTTGAGCTTCTGCTCCTTCTCCTCCTTCTCGCACTTGCGCGCCTGCCGCTGCAGCGACTTGGAGGTGAACTTGAGGTCGAAGATCTGGTTCATCAGC
TTCTCCGGGTTGCCCATGGTCGTCGCCGGCGAGAGGGGGGGACGCTAGAGCTGGGGATGGATCTGGGATTCGGCTAGGGTTTGAGTGAGATTAGGAGGAA
AATCGGGGAGGCCGATTTGTGGAAGGCTCGTGGAGGCGAGAAGGGGAACGAATGGGGAA