Detailed information on CNT30368707


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673967Sorghum bicolorSetaria viridis29.6542.3990.91231forward
CNT30193220Sorghum bicolorSecale cereale28.8825.491.56225forward
CNT30474298Sorghum bicolorSaccharum spontaneum68.4268.8695.12533forward
CNT30369646Sorghum bicolorOryza glumipatula28.8842.2981.78225forward
CNT30583511Sorghum bicolorEchinochloa crusgalli29.425.9992.14229forward
CNT30497176Sorghum bicolorDigitaria exilis29.422.7990.83229forward
CNT30115905Sorghum bicolorOryza nivara28.8842.0682.22225forward
CNT30557292Sorghum bicolorPanicum hallii29.5329.4991.74230forward

Expression of CNT30368707

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MHIVKTGGVSFQHLHPKLTKRHHPEAVIIIAVQYSAGE*

>peptide 2 (48 aa)
MAPMTSAISSVMGRSGGSSGRSLMPIFFRAVSTRRKNLGTPFHTVSWM*

>peptide 3 (59 aa)
MPAAIPFMVRMSVSSSPGGYSLAGFSFTSPAGLFSSANSLDSGGCGVTLKLGSLIRFSV*

>peptide 4 (34 aa)
MMFIITIYLRCQDFPLGLHNKSEKYKEAKAEEIT*

Sequence

>CNT30368707
TGGGCTGGGATACATATATAGTGGCATTTTCCCTGCCAAGATTCATTAATACATAATAGTAAATTTGTAGATTATATGATGTTCATTATTACAATATATT
TAAGATGCCAAGATTTTCCACTTGGACTTCACAACAAGAGTGAAAAATATAAAGAGGCCAAAGCCGAGGAAATTACATAAACATGCATATAGTGAAAACA
GGTGGTGTCAGTTTTCAGCATCTCCATCCAAAACTGACAAAACGCCACCATCCGGAAGCTGTGATTATTATTGCCGTGCAGTACTCTGCAGGTGAGTGAA
GGGGAAGCGGCCTAGCCGGTGTTCTGCATGCCGGCGGCGATACCCTTCATGGTGAGGATGAGCGTGTCTTCCAGCCCCGGCGGGTACTCGCTCGCCGGGT
TCAGCTTCACCAGTCCGGCGGGCTTGTTCTCGTCGGCGAACTCCTTGGACAGCGGCGGCTGCGGCGTCACCTTGAAGCTGGGGTCCCTTATCCGCTTCAG
CGTGTAGGCCTGGAACACGTTCAGGGTGATGATGTAGGGGCCGAAGCTGTCGATCGGGAGCTCGGCCAGGACGCGCATGGCGCCGATGACGTCGGCGATC
TCCTCGGTCATGGGAAGGTCCGGGGGCAGCAGTGGGCGCTCATTGATGCCGATATTCTTCAGGGCTGTATCCACACGGCGCAAAAACTTAGGCACACCGT
TCCATACAGTTTCATGGATGTAGCTCATCCCATAGCGCATTTCATCCTGTGGGGTGGGTTGTGCTCTCCTGATTTCATC