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Detailed information on CNT30368525


BLAST search results

BLAST vs Swiss-Prot:
sp|P35476|PLAS1_TOBAC, E-value = 2e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673857Sorghum bicolorSetaria viridis35.9331.1395.28212forward
CNT30226316Sorghum bicolorHordeum vulgare16.2722.5989.5896forward
CNT30391539Sorghum bicolorTriticum turgidum16.7836.490.9199forward
CNT30443574Sorghum bicolorAegilops tauschii35.9338.6989.15212forward
CNT30141888Sorghum bicolorLolium perenne35.9339.9288.21212forward
CNT3010819Sorghum bicolorZea mays21.8634.5896.12129forward
CNT30370409Sorghum bicolorOryza glumipatula35.5926.9688.1210forward
CNT30148503Sorghum bicolorBrachypodium distachyon25.9348.8888.24153forward
CNT30102318Sorghum bicolorOryza rufipogon35.5933.8788.1210forward
CNT30583031Sorghum bicolorEchinochloa crusgalli35.9324.4894.81212forward
CNT30116921Sorghum bicolorOryza nivara35.5931.4488.1210forward
CNT30557529Sorghum bicolorPanicum hallii28.6480.8695.27169forward

Expression of CNT30368525

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MHVDRSTNKAGNATASKEEEEEEEEEEEEEEEYAWWPDPWRRNIYGEDTSSRT*

>peptide 2 (71 aa)
WCERRDRSMVRTVDNRGCMWTGVQIKQEMQQLVRRRRRRRRRRRRRRRNMHGGRIHGGAIYMEKILVVGRS*

Sequence

>CNT30368525
TGGTGTGAAAGAAGAGATCGATCGATGGTACGGACGGTGGATAATCGAGGATGCATGTGGACCGGAGTACAAATAAAGCAGGAAATGCAACAGCTAGTAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAATATGCATGGTGGCCGGATCCATGGCGGCGCAATATATATGGAGAAGATACTAGT
AGTAGGACGTAGTTAGTTGACGGTGACCTTGCCGACCATTCCGGCTCCTTGGTGCGGCTCGCAGTAGAAGCCGTAGGTGCCCGGCACGGTGAGGGTGACG
GAGTAGGTCTCGCCTGGCGCGTTGAGGTACTCCTCCTGCGAGATCTTGGTGGCGTCCACGCCGCTGGGCACCTCGTCCTCGTCGAAGACGACGTTGTGCG
GGTACCCGGCGTTGTTCTTGAAGGGCGCTGGCGGCCACGGCCACGGCGGCCGTGCCGGCGGCCTTGCCGAGAGAGGCGCGCACGGTGAAGGACGACCTCC
TGGCCACGGCGCGGGCGGCCGGCGCGGCGAAGGCGGAAGGGGCGGTGATGGTGGCAGAGGAGAGGGAGGCCATGGCGAGCGAGCTAGCGA