CANTATAdb - search

Detailed information on CNT30368444

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30674280	Sorghum bicolor	Setaria viridis	16.78	42.74	89.32	103	forward
CNT30242892	Sorghum bicolor	Avena sativa	16.29	24.51	88	100	forward
CNT30102047	Sorghum bicolor	Oryza rufipogon	16.29	20.16	90	100	forward

Expression of CNT30368444

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MWFLQAGLSISLCDCSRTNHSKAYTLRRAS*

>peptide 2 (59 aa)
MQKHLWLHQCGSYKLGSPFPFVIALAQITQKHIHCDELASRTPCDISILKRQTTQPGRQ*

Sequence

>CNT30368444
TGTGCTATAATTGTAAGCAGTGACATTTTACTTGCTCAAAGTCAGTAGATGCTTTTTACAATCAGCTAGTGCTATACAGGTATGCAAAAACATCTTTGGC
TACATCAATGTGGTTCCTACAAGCTGGGCTCTCCATTTCCCTTTGTGATTGCTCTCGCACAAATCACTCAAAAGCATATACACTGCGACGAGCTAGCTAG
CCGTACGCCTTGTGATATCTCAATTCTCAAGCGACAAACAACTCAGCCTGGCCGTCAATGAACAAGCTCATGAACTCCTCCCCGTCCACAGTCTCCTTCT
CGATCAGGAGTTGAGCGAGCTTGTGGAGAAGGGATTGGCGGTCGGCGTGGGCGCCTCGGCCTGGAGCTCGGGCGCGGGAGCCGGAGCCGGGGGAACCGGG
GCGGGGGTAGGCGCGTCGGCGGCGAGCGCGGGCGAGGCCGCGAGAGCGAGGAGCGCCGCACCCGTGGGGAGGGGCTTGGCGAGAGGGAGCCGCGGCGGGC
GGAGGGAGGAAGGCTTGGGCTTTGGGAGCGAGGCGGTGATGAGGAGATAGTTCTTGCCTTCTTGGGGGATGGCCGGGTGGGTGAGGTAGAGGTACTGAGG
TGGGAGGCGGGACC