Detailed information on CNT30368424


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673627Sorghum bicolorSetaria viridis13.1754.4287.92240forward
CNT30374052Sorghum bicolorArabidopsis thaliana3.421.9987.162forward
CNT3016300Sorghum bicolorZea mays20.6960.992.84377forward
CNT30350530Sorghum bicolorEragrostis tef11.5820.2192.42211forward

Expression of CNT30368424

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MHIVKTGGVSFQHLHPKLTKRHHPEAVIIIAVQYSAGE*

>peptide 2 (34 aa)
MQGAGRWLQIGMGSWRVCGRRVHAGLERHACDRR*

>peptide 3 (30 aa)
MVGARRGVLLVLLLCCELIDQCRAPAGGFK*

>peptide 4 (95 aa)
MPAAIPFMGLSSSATSSSSYKPAMPGSPLAKTISSRSRVTLKNGHSLYISLSFWKFLMSLSMAHLKAAPTPSHTGRWNLVCVHEKIQGMARRVMM*

>peptide 5 (43 aa)
MHVIGGKGSRELRAAVATLLLAGIAAVDVLCHCALACLCYSAG*

>peptide 6 (42 aa)
MEWCRSDAMAAAAGEWAGKRERSWRWLERGAACCSCCSSAAS*

>peptide 7 (38 aa)
FVDYMMFIITIYLRCQDFPLGLHNKSEKYKEAKAEEIT*

>peptide 8 (98 aa)
MAPMTSAISSVMGRSGGSSGRLPFSSDTSHSIRLSSGHERYDPMPRCVVMASITSVCRSDSCRMSSFTRERPNANTWRRRSRRLPSAMALSPHSHRDL*

Sequence

>CNT30368424
ATTTGTAGATTATATGATGTTCATTATTACAATATATTTAAGATGCCAAGATTTTCCACTTGGACTTCACAACAAGAGTGAAAAATATAAAGAGGCCAAA
GCCGAGGAAATTACATAAACATGCATATAGTGAAAACAGGTGGTGTCAGTTTTCAGCATCTCCATCCAAAACTGACAAAACGCCACCATCCGGAAGCTGT
GATTATTATTGCCGTGCAGTACTCTGCAGGTGAGTGAAGGGGAAGCGGCCTAGCCGGTGTTCTGCATGCCGGCGGCGATACCCTTCATGGGCTTGAGTTC
CTCGGCGACAAGCAGCTCGTCGTACAAGCCGGCAATGCCAGGGTCTCCCTTGGCGAAAACCATCTCCAGCAGGTCCAGGGTGACCCTGAAGAATGGCCAC
TCGTTGTACATCTCCTTGAGCTTCTGGAAGTTCTTGATGTCCTTGTCGATGGCCCACTTGAAGGCGGCGCCGACTCCCAGCCACACGGGGAGGTGGAACC
TCGTCTGTGTCCACGAGAAGATCCAGGGGATGGCACGCAGGGTGATGATGTAGGGGCCGAAGCTGTCGATCGGGAGCTCGGCCAGGACGCGCATGGCGCC
GATGACGTCGGCGATCTCCTCGGTCATGGGAAGGTCCGGGGGCAGCAGTGGGCGCTTGCCTTTCAGCTCCGACACCAGCCACTCCATCCGCTTGTCCTCG
GGCCACGAGCGGTACGACCCGATGCCGAGGTGCGTGGTGATGGCGTCGATCACGTCGGTGTGCCGCTCCGACTCCTGCCGGATGTCCAGCTTCACCAGGG
AGAGACCGAACGCGAACACCTGGCGAAGGAGGTCCAGGAGGCTCCCGTCGGCGATGGCCTTGTCGCCGCACTCACACAGGGATTTGTAGCACAGCTCAAG
GGGCTCAAGGAACTGCACGCATGAGATGCATTTTTTTTTGTGCGACAGTAAGAATCAGACCGAAATGTACTAGTACATCATATTATTGATTGATCGCTTA
AATCACATTTCAGTTTCACAAAAGGAATAAAATTAAGGAACTTGCCGATTTATTTACCTCTTCGATCTTGGTAAATACCGCGTCCTCAGAAATTTCAGAA
AATCCAGTTGCCAGCAGATGGCGTGCACGCTCGCGTGTGTTGTATAACTTGTCCCTTACAGCACCAAGGATCACCCGGTAGGGCTCCTTGCTGTTCCGGC
GGCGCTGCGCGTCGATGGAGTGGTGCCGCTCGGACGCCATGGCGGCGGCGGCCGGGGAGTGGGCCGGGAAGCGCGAACGAAGCTGGAGATGGTTGGAGCG
CGGCGCGGCGTGTTGCTCGTGCTGCTCCTCTGCTGCGAGTTGATTGATCAATGCAGGGCGCCGGCCGGTGGCTTCAAATAGGGATGGGGAGTTGGCGAGT
GTGTGGTCGGCGTGTGCACGCGGGATTGGAAAGGCATGCATGTGATCGGCGGTAAGGGTAGCCGAGAGCTGCGCGCGGCTGTGGCTACGCTGCTTTTGGC
TGGGATCGCTGCTGTGGACGTACTTTGTCACTGCGCACTTGCCTGCTTGTGTTATTCCGCTGGCTAATTGCCTGTTTGCAGGACGTGGAGAGGGGTGTCT
GCTAGTGCTAGCTAGTGGTAAGGATGGGGACGACGCTTCAAATAACTCCTCGTGGTTCTTCTCTAGTCTAACTAAACGAACTAAATTAAAAAAATAAGAA
AGAAATTGTTTATTTAGTTTATTAAGTTAGACTAGAGAAAAACCGCGCAAGTATCCATTTAGAGTACCATCTTCATTCTTAGCTAGTGGTAACCGCAAAG
GGGACCGGGAGAGCTGCGGCCG