Detailed information on CNT30368405


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30140847Sorghum bicolorLolium perenne16.2936.3288.89207forward
CNT3016288Sorghum bicolorZea mays35.9688.3988.62457forward
CNT30216754Sorghum bicolorKalanchoe fedtschenkoi7.2420.9182.6192forward
CNT30148536Sorghum bicolorBrachypodium distachyon6.8540.6590.887forward

Expression of CNT30368405

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MHIVKTGGVSFQHLHPKLTKRHHPEAVIIIAVQYSAGE*

>peptide 2 (34 aa)
MMFIITIYLRCQDFPLGLHNKSEKYKEAKAEEIT*

>peptide 3 (72 aa)
MSDSVVAEPSSEKSPCLSLLFRRRCASSTSSARLARLSMCRMELATRMASAGASPVSLAPSSPSLDVSFLPS*

>peptide 4 (90 aa)
MHRIWDVEEAVDEQGVILDELLGDLAGCEGTELRVDGVVPLGRHGGGGRGVGREARTKLEMVGARRGVLLVLLLCCELIDQCRAPAGGFK*

>peptide 5 (72 aa)
MSRKRSTSRASYWMSSSETLPGARARSCASMEWCRSDAMAAAAGEWAGKRERSWRWLERGAACCSCCSSAAS*

>peptide 6 (59 aa)
MPAAIPFMVRMSVSSSPGGYSLAGFSFTSPAGLFSSANSLDSGGCGVTLKLGSLIRFSV*

Sequence

>CNT30368405
TGGGCTGGGATACATATATAGTGGCATTTTCCCTGCCAAGATTCATTAATACATAATAGTAAATTTGTAGATTATATGATGTTCATTATTACAATATATT
TAAGATGCCAAGATTTTCCACTTGGACTTCACAACAAGAGTGAAAAATATAAAGAGGCCAAAGCCGAGGAAATTACATAAACATGCATATAGTGAAAACA
GGTGGTGTCAGTTTTCAGCATCTCCATCCAAAACTGACAAAACGCCACCATCCGGAAGCTGTGATTATTATTGCCGTGCAGTACTCTGCAGGTGAGTGAA
GGGGAAGCGGCCTAGCCGGTGTTCTGCATGCCGGCGGCGATACCCTTCATGGTGAGGATGAGCGTGTCTTCCAGCCCCGGCGGGTACTCGCTCGCCGGGT
TCAGCTTCACCAGTCCGGCGGGCTTGTTCTCGTCGGCGAACTCCTTGGACAGCGGCGGCTGCGGCGTCACCTTGAAGCTGGGGTCCCTTATCCGCTTCAG
CGTGTAGGCCTGGAACACGTTCAGGGTGGCGCTCATTGATGCCGATATTCTTCAGGGCTGTATCCACACGGCGCAAAAACTTAGGCACACCGTTCCATAC
AGTTTCATGGATGTAGCTCATCCCATAGCGCATTTCATCCTGTGGGGTCGACGCTCTGGTTCTTGAGCGCCTCGAACACCTCCGCGGGGGTCTTGCCGAG
CGACACGAGGCGCTTGAGCGTCTCCTCGATGTCGGACTCGGTGGTGGCGGAGCCCTCGTCGGAGAAGTCCCCGTGCTTGAGCTTGCTGTTCCGGCGGCGG
TGCGCCAGCTCCACTTCCTCCGCCAGGTTGGCGAGGTTGAGCATGTGCAGGATGGAGCTCGCCACCAGGATGGCGTCGGCGGGGGCCAGCCCCGTCAGCT
TGGCTCCCAGCTCCCCCAGCTTGGACGTGTCTTTCTTGCCCTCGTAGTCGGCCGACACCTCGTAGCACTCCTGGACCTGCATGCATCGCATTTGGGATGT
CGAGGAAGCGGTCGACGAGCAGGGCGTCATACTGGATGAGCTCCTCGGAGACCTTGCCGGGTGCGAGGGCACGGAGCTGCGCGTCGATGGAGTGGTGCCG
CTCGGACGCCATGGCGGCGGCGGCCGGGGAGTGGGCCGGGAAGCGCGAACGAAGCTGGAGATGGTTGGAGCGCGGCGCGGCGTGTTGCTCGTGCTGCTCC
TCTGCTGCGAGTTGATTGATCAATGCAGGGCGCCGGCCGGTGGCTTCAAATAGGGATGGGGAGTTGGCGAG