Detailed information on CNT30368332


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z974|FTSH1_ORYSJ, E-value = 4e-117

BLAST vs NONCODE:
NONBNAT002381, E-value = 2e-11

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693988Sorghum bicolorOryza sativa11.4444.7385.99157forward
CNT30673684Sorghum bicolorSetaria viridis10.4232.4392.31143forward
CNT30708769Sorghum bicolorGlycine max11.0850.580.26152forward
CNT30226949Sorghum bicolorHordeum vulgare6.5641.6788.8990forward
CNT3085131Sorghum bicolorVigna radiata16.4779.380.97226forward
CNT30543849Sorghum bicolorBrassica napus14.3666.3379.19197forward
CNT30144534Sorghum bicolorMedicago truncatula10.239.5584.29140forward
CNT3079806Sorghum bicolorBrassica juncea8.0226.4483.64110forward
CNT30476440Sorghum bicolorSaccharum spontaneum13.4146.3594.02184forward

Expression of CNT30368332

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MVCSLSSLPPPSPAPRCLPTASISSMKTMQGALALAFSKRSRTLEAPTPTKSSTNSEAAQEKKGTPWGSWLRARCTYRGS*

>peptide 2 (59 aa)
MQKHLWLHQCGSYKLGSPFPFVIALAQITQKHIHCDELASRTPCDISILKRQTTQPGRQ*

>peptide 3 (51 aa)
VDAFYNQLVLYRYAKTSLATSMWFLQAGLSISLCDCSRTNHSKAYTLRRAS*

>peptide 4 (37 aa)
MGPRRRGTGRGGPGRWGPPRWRGGRRRPSAGAGPRPW*

>peptide 5 (34 aa)
SRCFLQSASAIQVCKNIFGYINVVPTSWALHFPL*

Sequence

>CNT30368332
AGTAGATGCTTTTTACAATCAGCTAGTGCTATACAGGTATGCAAAAACATCTTTGGCTACATCAATGTGGTTCCTACAAGCTGGGCTCTCCATTTCCCTT
TGTGATTGCTCTCGCACAAATCACTCAAAAGCATATACACTGCGACGAGCTAGCTAGCCGTACGCCTTGTGATATCTCAATTCTCAAGCGACAAACAACT
CAGCCTGGCCGTCAATGAACAAGCTCATGAACTCCTCCCCGTCCACAGTCTCCTTCTCGATCAGGAGTTGAGCGAGCTTAATCTTGACGCGCCCTGCAAC
ATCTGGCCTGTCAACGGTGACCTGCCTATCGAACCTCCCTGGCCGGAGGAGTGCCGAGTCCAGCACATCAGGCCTATTGGTGGCGGCAAGCACAATGACA
CCGCTGTTGCCAGCGAAGCCATCCATCTCCGTCAAGAGCTGATTAATGGTCTGCTCCCTCTCGTCATTACCCCCACCAAGTCCGGCACCACGCTGCCTCC
CGACGGCATCAATCTCATCAATGAAGACAATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAG
CTCGACGAACTCAGAGGCCGCGCAGGAGAAGAAGGGCACCCCTTGGGGATCTTGGCTCCGAGCGCGGTGTACTTATCGGGGTTCTTAAGGAAATCAACGA
CCTCCTGCAGCTCGAGCTTGGCCTGGTCCGCACCAGCGACGTCGAGGAACGTGACGCCCGTCTCAGGCACCTCCTGGAACTTGCTCTTGGAGCGGCCGAA
GTCCATGGGCCCGCGAAGGCGAGGAACGGGAAGAGGAGGTCCGGGTCGTTGGGGACCACCACGGTGGCGCGGCGGCCGTCGACGGCCGTCAGCTGGAGCA
GGCCCCCGTCCTTGGTGAAGCGCACGCGCTCGACTTTTCCCCGCTTGACGGCGGACAAGAACTCGCTGTACCGCCACTGCGCGCCCTCGGGGAGGTCGGA
GGCCGCCGCGGAGGGCTTGGGGGCTGTCAGGAGGGAGGTGGAGAAGGGATTGGCGGTCGGCGTGGGCGCCTCGGCCTGGAGCTCGGGCGCGGGAGCCGGA
GCCGGGGGAACCGGGGCGGGGGTAGGCGCGTCGGCGGCGAGCGCGGGCGAGGCCGCGAGAGCGAGGAGCGCCGCACCCGTGGGGAGGGGCTTGGCGAGAG
GGAGCCGCGGCGGGCGGAGGGAGGAAGGCTTGGGCTTTGGGAGCGAGGCGGTGATGAGGAGGTGGGAGGACGACACCGACGGCGGCGCCATGGCTGATGA
GTAGATAGTTCTTGCCTTCTTGGGGGATGGCCGGGTGGGTGAGGTAGAGGTACTGAGGTGGGAGGCGGGACC