Detailed information on CNT30368187


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DG05|PSAH_ORYSJ, E-value = 4e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30285390Sorghum bicolorTriticum aestivum28.5718.9287.1470forward
CNT30383171Sorghum bicolorTriticum turgidum28.5712.1785.7170forward
CNT30435258Sorghum bicolorAegilops tauschii28.1624.388.4169forward
CNT30242017Sorghum bicolorAvena sativa24.4912.4296.6760forward
CNT30656050Sorghum bicolorTriticum dicoccoides28.1611.2488.4169forward
CNT30130278Sorghum bicolorLolium perenne28.167.8792.7569forward
CNT3010986Sorghum bicolorZea mays93.0670.5985.09228forward
CNT30678866Sorghum bicolorTriticum urartu28.1611.0488.4169forward
CNT30720193Sorghum bicolorTriticum spelta28.1612.6488.4169forward
CNT30582794Sorghum bicolorEchinochloa crusgalli89.3950.1184.02219forward

Expression of CNT30368187

Peptides detected in this lncRNA

>peptide 1 (80 aa)
GAGCRARERRSRRGRSRRSCRRTWPRRRPCGWSGRRRGPTTTACWRRRASCRRWSCRRGPSRPRAARRRRRRGRPWRAHWL

>peptide 2 (80 aa)
LERVVGRGSVGAVEVEVDALVAVLGHDGGPAGGAAGGAGRRRRPAGDGELPAGDGAAGEALHGHGLHGDGGGEGGHGARTG

Sequence

>CNT30368187
CTGGAGCGGGTTGTAGGGCGAGGGAGCGTCGGAGCCGTAGAGGTCGAAGTAGACGCTCTTGTCGCCGTACTTGGCCACGACGGCGGCCCTGCGGGTGGAG
CGGCAGGCGGCGCGGGCCGACGACGACGGCCTGCTGGCGACGGCGAGCTTCCTGCCGGAGATGGAGCTGCCGGAGAGGCCCTTCACGGCCACGGGCTGCA
CGGAGACGGCGGCGGCGAGGGAGGCCATGGCGCGCGCACTGGCTG