Detailed information on CNT30367636


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693645Sorghum bicolorOryza sativa39.3128.0892.11114forward
CNT30176931Sorghum bicolorSecale cereale25.5215.6193.2474forward
CNT30596272Sorghum bicolorOryza meridionalis28.2835.6593.982forward
CNT30358992Sorghum bicolorLactuca sativa37.9323.8683.64110forward
CNT3032477Sorghum bicolorTheobroma cacao37.2453.7382.41108forward
CNT30116795Sorghum bicolorOryza nivara23.4531.9292.6568forward
CNT30557143Sorghum bicolorPanicum hallii39.3115.2893.86114forward

Expression of CNT30367636

Peptides detected in this lncRNA

>peptide 1 (32 aa)
CKRNPATEGFRNLVTPSVDACALWAVPNASLT*

>peptide 2 (35 aa)
QKEPCNRRLQKLGNSLSRCMCPVGCSKCIIDIKIC*

Sequence

>CNT30367636
TGCAAAAGGAACCCTGCAACAGAAGGCTTCAGAAACTTGGTAACTCCCTCAGTCGATGCATGTGCCCTGTGGGCTGTTCCAAATGCATCATTGACATAAA
GATCTGCTAGGGAGAGGGAGGTTGGCGCGGCGGCCGCGGACGCCATTGGGATTCGGACGGCGGCGGCGGCGGCGGCGGGTGGAGCGGAGAGACCGAGAGG
GAGTGATTCGGGAGCGCGGGAGGAGCGGGGTCTTGTGGGTCGTATAGAGGGCTTTGTGGATGAAAAGGTGGGGAAGGCTTATCGCTGGCG