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Detailed information on CNT30366541


BLAST search results

BLAST vs Swiss-Prot:
sp|A0A0P0XBU0|CCA1_ORYSJ, E-value = 7e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695461Sorghum bicolorOryza sativa21.4925.8687.67219forward
CNT30675512Sorghum bicolorSetaria viridis35.7285.4586.26364forward
CNT30523344Sorghum bicolorSetaria italica49.6663.8186.56506forward
CNT30497933Sorghum bicolorDigitaria exilis45.7343.885.62466forward

Expression of CNT30366541

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MDAWVNASIDSHLITCLIRMSSFSCSDQNASCPIFLR*

>peptide 2 (43 aa)
MLAVPFFSARECEALAVCLSTYVVSTDFGFSFICCIERSKYPS*

>peptide 3 (49 aa)
MLVAFLLRYLGCSCPASLEQRQHNYEENAVVWHCYQILDLKKALDGCMG*

>peptide 4 (56 aa)
MFTFRADLDTIKPFHFMIADLLYILLHVGVKRIIFHDGHISDFCFTCLDPPGCTMI*

Sequence

>CNT30366541
CAGAGTCTACGAGATAAGGTTTAAAAGCAGTCTAGCGGGCTGCTTGACAAGCATTAAAATACAGCACACAACAGATTAAGTTTAATGAAGCACTGCATTG
CAAGGTTTGAAGTCCTATAGTAGCTTAGATGTAAATATAACTTTGACATAAACTTCATGGTAGAGGCAGGCCGACCAGTCCCCATGTAGAGATCGATTAT
GTGGATGCTTCGCTCTCAAGACGAATCCTCTTGGTACCAACCTCGTCACTAGCCGGCACCCTATTCTCCTTCGCTTCCACAGAACATCTCTTGTATGGCT
TGAAGCCTGTTCGGCGCGATTTCAGCTTCAGGTGCGACAATTCATTGGGAAAGGAAGCCCTTGGCTCATCCATTGTGTCGAGGTCATGATCAATGCTTGT
GGCGTTCTTGTTGAGGTATCTTGGTTGCAGTTGCCCTGCATCATTGGAGCAAAGGCAGCATAATTATGAGGAAAATGCTGTGGTGTGGCACTGCTATCAA
ATTTTGGATCTGAAGAAAGCATTGGATGGATGCATGGGTTAATGCTTCCATTGATTCCCACTTGATCACTTGTTTGATCAGAATGAGTTCCTTCAGTTGC
AGTGACCAGAATGCTAGCTGTCCCATTTTTCTCCGCTAGGGAGTGCGAAGCTCTTGCAGTTTGTTTGTCCACATATGTTGTCTCCACAGATTTTGGCTTT
AGCTTCATTTGTTGCATTGAGAGATCCAAATATCCCTCGTGAGAATGTTCACATTTAGAGCTGATTTGGATACTATTAAGCCTTTCCATTTCATGATCGC
TGATCTCCTTTACATCCTCTTGCATGTTGGGGTTAAGAGAATTATTTTCCATGATGGTCATATCTCGGATTTCTGTTTTACTTGCCTCGACCCCCCTGGG
TGCACCATGATTTGAAGAGCTTTTGTTAACTGAAGAAAATGACGCAGATGGGGCATCACGGAAGAGATTAAGAACTTCTGAGCAACTTCCTTTTTCAGAC
AACTCCTTCCTTTGAAATT