Detailed information on CNT30366304


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7XSQ9|PIP12_ORYSJ, E-value = 9e-67

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523825Sorghum bicolorSetaria italica41.5365.1994.17206forward
CNT30437220Sorghum bicolorAegilops tauschii45.7739.6992.07227forward
CNT30658043Sorghum bicolorTriticum dicoccoides31.4556.9391.67156forward
CNT30232947Sorghum bicolorAnanas comosus15.7332.9191.0378forward
CNT30340874Sorghum bicolorEragrostis tef12.723.3392.0663reverse complement
CNT30595794Sorghum bicolorOryza meridionalis39.9290.4192.93198forward
CNT30116072Sorghum bicolorOryza nivara61.4937.1591.15305forward
CNT30603734Sorghum bicolorOryza punctata55.8521.183.39277forward

Expression of CNT30366304

Peptides detected in this lncRNA

>peptide 1 (52 aa)
AHGSPWRSSWRRWRRRRCRRGRRRGRRSCRQRTRRCPGCRRWRTLRWTWRRP*

>peptide 2 (31 aa)
MPPKDQAMPWMPTVAHFEVDLETPMTVRMEM*

>peptide 3 (45 aa)
RHMGVPGVPLGVGGGEDGVDEDEDEGEDHAAKGPGDALDADGGAL*

Sequence

>CNT30366304
CGGCACATGGGAGTCCCTGGCGTTCCTCTTGGCGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGACGAGGGCGAAGATCATGCCGCCAAAGGAC
CAGGCGATGCCCTGGATGCCGACGGTGGCGCACTTTGAGGTGGACTTGGAGACGCCCATGACGGTGAGGATGGAGATGTAGAGGAAGAGGAAGGTGGCGA
CGAACTCGGCGATGCCCGCGCGGTAGAAGGACCACGACTTGAGCTCACCGGGCTCGAAGAGCGGCGCCGGCGGGGGCTCCTTGTAGTCCTTGTCGTCGGT
GCCCTGCGCCGCCGTGCCGATGGGCTGGCGCTCCGAGTACTTGTTGGCGCCCAGGCGCACGTCCTCCTCCTTCCCCTCCATGTCGCGCGCCGGCTACTAT
TAGCTTCTTGCAGCAACCGAGCTTGGTTAGCTAGAGCTAGAAGAAGCTACTTGCTGAGCTGAGCTGAGATGGTGCGGTGCTTGTGTCGCAGCGGGA