Detailed information on CNT30366134


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39817|CALX_SOYBN, E-value = 2e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517641Sorghum bicolorJuglans regia22.0325.8487.77139forward
CNT30709122Sorghum bicolorGlycine max33.2859.6681.43210forward
CNT30140632Sorghum bicolorLolium perenne21.5566.6793.38136forward
CNT30605054Sorghum bicolorGossypium raimondii20.1322.488.19127forward
CNT30126269Sorghum bicolorCorymbia citriodora22.537.4783.1142forward
CNT30686114Sorghum bicolorTriticum urartu2930.691.26183forward
CNT30120416Sorghum bicolorCitrus clementina17.4352.6383.64110forward
CNT3038556Sorghum bicolorCucumis melo29.7923.882.45188forward
CNT30149228Sorghum bicolorBrachypodium distachyon25.0433.2689.24158forward
CNT30585446Sorghum bicolorEchinochloa crusgalli24.7251.6694.23156forward
CNT30116414Sorghum bicolorOryza nivara16.6437.595.24105forward
CNT30725707Sorghum bicolorLupinus angustifolius25.8329.5884.66163forward

Expression of CNT30366134

Peptides detected in this lncRNA

>peptide 1 (39 aa)
DYTRQAQHTNDQQELNSTAREGSWSNHVKTNQQQGERQR*

>peptide 2 (69 aa)
MGASSSQSSGFTASGSGILALSSQSSGFLSSGSGMVLDGISAGSKSSAERKFAFFFSSPSTKILTSLSGF

>peptide 3 (49 aa)
MEVATFSSSAIKILSNRMPSCIVQISIPIAAIGSKSGLSSSKYSGLGIS*

Sequence

>CNT30366134
GTGATTATACCCGTCAGGCACAGCACACAAATGACCAACAAGAACTAAATTCTACAGCTCGTGAAGGGTCCTGGTCTAACCATGTAAAAACAAATCAGCA
GCAGGGGGAGCGGCAGAGGTGACTTAAGTTCCTATTATACACTCAGAAATATTAAGAGTTCTCAAAATAAGCAGGCGCCAGAACAGCCAAACACATCAAA
AACAGGTCTTCTCCAGAATGGAGGTGGCAACCTTCTCATCATCAGCAATCAAGATATTGTCAAACAGGATGCCATCCTGCATTGTCCAGATCTCAATACC
AATAGCAGCAATTGGATCAAAATCAGGCTTGTCAAGCTCAAAGTACTCAGGGTTGGGGATCTCCTGAGGCTCGTCATCCAACCATCCCTCAGGCTTGGTG
GCTTCCTCATCCACAATTTCCATGGGGGCATCCTCATCCCAGTCATCAGGTTTCACTGCATCTGGATCAGGGATTTTAGCTCTCTCATCCCAGTCCTCTG
GCTTCTTGTCATCAGGGTCAGGAATGGTCTTGGATGGGATAAGTGCTGGCTCAAAATCATCAGCAGAAAGGAAGTTTGCCTTCTTCTTTTCTTCCCCGTC
GACCAAAATTCTGACCTCATTGTCTGGCTTC