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Detailed information on CNT30365925


BLAST search results

BLAST vs Swiss-Prot:
sp|P29402|CALX1_ARATH, E-value = 2e-74

BLAST vs NONCODE:
NONZMAT001268, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676354Sorghum bicolorSetaria viridis3358.1396.25293forward
CNT30523865Sorghum bicolorSetaria italica32.8876.6482.53292forward
CNT30517752Sorghum bicolorJuglans regia30.2962.5679.55269forward
CNT30377662Sorghum bicolorArabidopsis thaliana34.0133.4182.12302forward
CNT30281153Sorghum bicolorChenopodium quinoa41.156.1581.92365forward
CNT30728459Sorghum bicolorCorchorus capsularis3347.2681.23293forward
CNT30629341Sorghum bicolorVigna unguiculata34.2327.8480.92304forward
CNT3043981Sorghum bicolorPrunus dulcis8.6721.8884.4277forward
CNT30164689Sorghum bicolorPistacia vera34.0154.9181.13302forward
CNT30190468Sorghum bicolorSecale cereale45.9542.1990.2408forward
CNT30397803Sorghum bicolorTriticum turgidum37.7342.6888.96335forward
CNT30561418Sorghum bicolorActinidia chinensis30.4126.7981.48270forward
CNT30238817Sorghum bicolorBrassica oleracea35.759.4782.33317forward
CNT30144554Sorghum bicolorMedicago truncatula36.3737.7381.73323forward
CNT30264134Sorghum bicolorBrassica rapa35.736.5682.02317forward
CNT30464769Sorghum bicolorSaccharum spontaneum31.1980.9996.03277forward
CNT30349705Sorghum bicolorEragrostis tef34.0143.0891.06302forward
CNT30120413Sorghum bicolorCitrus clementina34.0137.3379.8302forward
CNT30101562Sorghum bicolorOryza rufipogon42.7943.9892.63380forward
CNT30594455Sorghum bicolorEragrostis curvula9.0137.5686.2580forward
CNT30333676Sorghum bicolorCynara cardunculus29.6250.9779.09263forward

Expression of CNT30365925

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRELVIWDRRWEFEVMLNILSSLGILVLKDEMNLVG*

>peptide 2 (40 aa)
MVLDGISAGSKSSAERKFAFFFSSPSTKILTSLSGFKIAV*

Sequence

>CNT30365925
TTGAACAAGTGATTATACCCGTCAGGCACAGCACACAAATGACCAACAAGAACTAAATTCTACAGCTCGTGAAGGGTCCTGGTCTAACCATGTAAAAACA
AATCAGCAGCAGGGGGAGCGGCAGAGGTGACTTAAGTTCCTATTATACACTCAGAAATATTAAGAGTTCTCAAAATAAGCAGGCGCCAGAACAGCCAAAC
ACATCAAAAACAGGTCTCTACGTCTCCCTGCGGGTCCTCCGACGTGGGGCTGCTGTCTCCTCCTTTTCGTCCTCTTTCTCATCCTTGTCACCACTGCTTC
CAGCACCGTCGGTCTCTGTGGCTTTGGGCTTCTTCGCCTCAGCTGCGGGTTTCACTGCATCTGGATCAGGGATTTTAGCTCTCTCATCCCAGTCCTCTGG
CTTCTTGTCATCAGGGTCAGGAATGGTCTTGGATGGGATAAGTGCTGGCTCAAAATCATCAGCAGAAAGGAAGTTTGCCTTCTTCTTTTCTTCCCCGTCG
ACCAAAATTCTGACCTCATTGTCTGGCTTCAAGATAGCCGTGTAGACATGAGAGAGCTTGTCATATGGGACAGAAGGTGGGAATTTGAGGTGATGCTCAA
CATACTTTCCAGTCTTGGGATTCTTGTGCTTAAGGATGAAATGAACCTTGTTGGTTGACCCACACTTATCTGGACCAAACATAATTGTGTATGGAGTCTC
ATTATCAAACTCCTTGGCATCCCATCCAGCATCCTGAGGGCGGATGTACTTAATGTAGGACCACTGTCCCATCCTTCAAAGTAACTGGCTCATCAAGCTC
CTTGATTATGGCGTATTTCCTTGCCTTCTCACTGACAAGGAGGCCATAGTCTTCATGGCCATCACTCTTGGCATGCTTCCACACACCT