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Detailed information on CNT30365536


BLAST search results

BLAST vs Swiss-Prot:
sp|Q7M443|CHIT2_TULSB, E-value = 6e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696315Sorghum bicolorOryza sativa48.3138.0885.41329forward
CNT30679789Sorghum bicolorTriticum urartu44.7960.5282.62305forward
CNT30577945Sorghum bicolorOryza barthii16.5923.3585.84113forward

Expression of CNT30365536

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MNSPGSLFCRCSSLAALMPCSGESSPVTLPVLKLARTLPPG*

>peptide 2 (64 aa)
MEVGVKTALTMSCTLSPPSPAMTATLGCAALMAATAAGVRLPVSQNGLNTPLVGTGFGCCPTGV*

Sequence

>CNT30365536
GAGGTTTATTATTTATTTATTGTAATATAAAAAGTGTGACCCCTTGTTAAGCCAAGTCCTGATCCGGCAGATCAGTGGTTGGCAATGATCTGCTGCGCCT
CCGTCTCGTACTTGAAGCCGTAGCTGCTCTGCTTGGAGCTGTCCGCTGACCAGATGAACAGCCCGGGCAGCTTGTTCTGCCGCTGCAGCTCCTTGGCCGC
ACTGATGCCCTGCTCCGGCGAGAGCAGTCCGGTGACGTTGCCGGTCTTGAAGCTGGCGAGGACCTTGCCGCCGGGGTAGTTCGCCGACTGGTTGTTGTAG
AACATGACGTACGTCTGCACGTCGGTGTTGGCGCCGTAGCCGTAGAACTGGAAGTTGACGTAGTCGATGACGCCGGAGTACTTGCTCCAGAGCGGCTGGT
AGTACTTCTGAACCACGGGGTCCTCGAACGGCGCGATGGAGGTCGGGGTGAAGACGGCCTTGACGATGTCCTGCACGCTGTCGCCGCCGAGCCCCGCCAT
GACGGCGACGTTGGGGTGCGCGGCCTTGATGGCGGCCACGGCGGCCGGGGTCAGGTTGCCAGTGTCCCAGAACGGGCTGAACACGCCGTTGGTCGGCACC
GGCTTCGGCTGCTGCCCCACCGGCGTGTAGTCGATGGCGAAGGAGAGGATGAAGTGGAAGCTGAGCAAGGCGTTGATGGGC