Detailed information on CNT30365074


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT002254, E-value = 5e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677153Sorghum bicolorSetaria viridis27.1857.0592.13178forward
CNT30317531Sorghum bicolorCorylus avellana10.9924.4986.1172reverse complement
CNT30403855Sorghum bicolorBeta vulgaris11.1520.0584.9373forward
CNT30589619Sorghum bicolorMusa acuminata20.9253.5284.67137forward
CNT30555334Sorghum bicolorOryza glaberrima25.851.5291.72169forward
CNT30137317Sorghum bicolorLolium perenne11.1524.3393.1573forward
CNT30686076Sorghum bicolorTriticum urartu23.8255.5291.67156forward
CNT30592775Sorghum bicolorEragrostis curvula13.1334.9688.3786forward

Expression of CNT30365074

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MPLSAQSSSIMWRMVCDSIATASSTSNSSPSELLRVIIFFSPSAAIDSIGGKWGKVVSTRRIGSRTEP*

>peptide 2 (66 aa)
MEESHKTSTRIDLLGQQPMSFHSNNRPLTTSVLPNTFSSKVTPKILTTITMTFKSRALQGSRYDET*

>peptide 3 (48 aa)
MTKPRHKRSEGSAPPYSKAHWFSLRISSSSSGVKSFLMLKVLTGGSWS*

Sequence

>CNT30365074
TAGGCAATATCACAATAATGATAGTACTTCGCCAAGAGATTCAAGATGGAGGAATCGCACAAAACATCTACGAGGATTGACCTCTTAGGGCAGCAGCCGA
TGTCCTTTCATAGTAATAACCGACCATTGACCACATCAGTTTTACCCAACACATTCTCAAGCAAAGTGACTCCCAAAATACTTACAACCATTACGATGAC
ATTTAAAAGCAGAGCATTGCAAGGTAGTAGATATGACGAAACCTAGGCATAAGAGATCAGAGGGCTCAGCACCTCCTTACTCAAAGGCCCACTGGTTCTC
CCTGCGGATCTCCTCTTCCTCCTCAGGGGTGAAGTCATTCTTGATGTTGAAGGTCCTCACCGGAGGATCTTGGAGTTGACGTTAGGGAGCGGGATGCCGT
TGTCGGCGCAGTCATCTTCGATCATGTGGCGGATGGTCTGCGACTCCATCGCCACCGCCTCCTCCACCTCGAACTCCTCACCATCTGAGCTTTTGAGGGT
TATCATTTTCTTTTCGCCCTCGGCCGCCATCGATTCGATCGGAGGGAAGTGGGGAAAGGTGGTGAGCACTCGCCGGATCGGATCGAGGACGGAACCCTAG
CTCTGTAGCTGCTGCGCGAAGAGGGCGAAAGATTGGGGAAGTCGATTAGGGATTG