Detailed information on CNT30364978


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670622Sorghum bicolorSetaria viridis79.0984.4781.03348forward
CNT30520004Sorghum bicolorSetaria italica46.1439.882.76203forward
CNT30190689Sorghum bicolorSecale cereale15.2325.0988.0667forward
CNT30302147Sorghum bicolorTriticum aestivum12.0520.3888.6853forward
CNT30441345Sorghum bicolorAegilops tauschii11.5924.2990.251forward
CNT30461748Sorghum bicolorSaccharum spontaneum93.8683.4394.43413forward
CNT307225Sorghum bicolorZea mays70.6857.4986.82311forward

Expression of CNT30364978

Peptides detected in this lncRNA

>peptide 1 (36 aa)
QSIHKNRNVCLHNCISSGVSKGNPKHWNKISDWIIL*

>peptide 2 (47 aa)
MLGPLAFSSILGQIRISGVIGIWGLIALGLLSWGSAIASSSIRRWWW*

>peptide 3 (61 aa)
SQYIKTETFASTIVSAAVCPRETQNTGTKSQTGSSYRITVVSMHSGKTCWAPLRFPASWGR*

Sequence

>CNT30364978
CCAGTCAATACATAAAAACAGAAACGTTTGCCTCCACAATTGTATCAGCAGCGGTGTGTCCAAGGGAAACCCAAAACACTGGAACAAAATCTCAGACTGG
ATCATCCTATAGAATTACAGTTGTATCGATGCACTCAGGCAAAACATGCTGGGCCCCCTTGCGTTTTCCAGCATCTTGGGGCAGATAAGAATCTCAGGCG
TCATTGGCATATGGGGACTCATCGCGCTGGGGCTGCTGTCCTGGGGATCTGCTATAGCTTCTTCTAGCATCAGGAGGTGGTGGTGGTGACCTGCTCATTT
CTCGGGCTCCCCGTGGTGACCTGCTGTTATTTCTGGGAGGAGGCGGCGGCAGCGGCGGTGACCTGCTGAGACTCCGTGCACGAGATCCTGGTGGTGACCT
GCTGTAACTTCGCCTCCTAGGAGAACGATCTCGTGGGCTG