CANTATAdb - search

Detailed information on CNT30364958

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6RS96|FAD22_DIMSI, E-value = 3e-48

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30617758	Sorghum bicolor	Sesamum indicum	5.62	28.26	87.69	65	forward
CNT30302408	Sorghum bicolor	Triticum aestivum	42.73	66.49	87.65	494	forward
CNT30225510	Sorghum bicolor	Hordeum vulgare	10.64	41.28	87.8	123	forward
CNT30395404	Sorghum bicolor	Triticum turgidum	18.43	59.66	87.32	213	forward
CNT30442203	Sorghum bicolor	Aegilops tauschii	42.73	44.87	87.45	494	forward
CNT30254552	Sorghum bicolor	Avena sativa	14.62	37.89	91.72	169	forward
CNT30666984	Sorghum bicolor	Triticum dicoccoides	42.73	50.88	86.84	494	forward
CNT30139418	Sorghum bicolor	Lolium perenne	41.78	43.2	87.37	483	forward
CNT30323306	Sorghum bicolor	Asparagus officinalis	13.32	38.79	81.82	154	forward
CNT30575127	Sorghum bicolor	Oryza barthii	34.34	31.79	88.41	397	forward
CNT30583774	Sorghum bicolor	Echinochloa crusgalli	42.73	28.94	92.71	494	forward

Expression of CNT30364958

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MCTSRPTGLLYTYGVYHASASFFFGTNTSSRSREPVLEWWRRWLYFHEKYGTISDECSTRPTMSSRSW*

>peptide 2 (41 aa)
MPITRRPPPAKPTTATTRTQTRKKKNLGLPKAQPWAEDTLS*

>peptide 3 (38 aa)
DANAMTDAHDKHGHAGTGMATDANHTTTAAGKAYNSDD*

Sequence

>CNT30364958
TGACGCCAACGCGATGACAGACGCACACGACAAGCACGGCCACGCAGGCACAGGCATGGCCACGGATGCCAATCACACGACGACCGCCGCCGGCAAAGCC
TACAACAGCGACGACTAGGACGCAAACGAGAAAAAAAAAAAACTTGGGACTACCCAAAGCTCAGCCATGGGCAGAGGACACACTAAGTTGACGAATTTGC
CTACTTGTACTTGATGGCAGCTCTAGCGATGGCACTGCAATAAGCCTTCTCTGTTCCCAAATGCTCTCTTCCTGTCTAAAGCCTGATGACTAACCAGAGA
TAGCTAGAATTTGTTGTTGTACCAGAAGATGCCCTTGCGGTTCTCAGGCTCGACGTAGATGCACTCCCTGGCTTCACGCCAGGTCGCCTTGGCAACAGGA
GTTGGGTCGAACTGGTAGTACTCGCCAAGGATAGGCTTGATCGCCTTGGTGATGAGCACAAGCCACGCGTTCACGATCAGCAGTGGCACGGCATAGACGC
GCACCACCCACCAGAACCCGAACGTTGCCGCCAGCTTGTACAGACCAAACGACACGGCCATGACGCCAGCATCCGAGATGAAGATCTGTGCGCGCTCCCG
GTCGTTGTAGATCGGGCCGTAGGGGTCGAAGTGGCAGGCGAAGCGCGGGTACGGGCGTCCCGACGCGTTGGTGGCCAGGTACAGCGGCCACCCGAGGGTG
AGCTGCACAACGATGTGCACCAGCCGGCCGACGGGGTTGTTGTACACGTACGGGGTGTACCACGCCAGCGCTTCCTTCTTCTTTGGCACGAACACCTCGT
CTCGCTCCAGGGAGCCGGTGTTGGAGTGGTGGCGCCGGTGGCTGTACTTCCACGAGAAGTACGGCACCATCAGCGACGAGTGCAGCACCAGGCCAACGAT
GTCATCCAGGAGCTGGTAGTCGGAGAAGGCATGGTGGCCGCGTAGTGGAGCGGGCTTGGGAGCGCCGGTATGATGGCCAGCGCAAAGTACAGGAGCGCCG
CGGCAATGATGAGGTCATGGACCACGTAGGAGAAGGACTTCAACACTGAGCGCTCGAAGCAGTGTGGTGGAATGGCCTTCTTGATCTGACCCACCGTGAA
CGGTGGCTTCTCCACCGGAGATCGCTGCATGGCAGCGCCACCAGTAGCACGGGCGA