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Detailed information on CNT30364755


BLAST search results

BLAST vs Swiss-Prot:
sp|P05993|PAPA5_CARPA, E-value = 7e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30143899Sorghum bicolorMedicago truncatula11.5644.0683.1589forward
CNT30116007Sorghum bicolorOryza nivara29.7433.7885.59229forward

Expression of CNT30364755

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MACPSGEWGQNQLRHSQQGEHRGQGSGGTRPASGRRT*

>peptide 2 (48 aa)
MRRKPNINLQQASRCRFTSLLPSIYKTAQMEHILLAGIVVLQYMKSPL*

Sequence

>CNT30364755
TAAAATGCGTATACAGATGTTGATAACTTTGCTACATCCAAATAGCGTGTAGCATGCGTCGCAAGCCAAACATAAACTTACAGCAAGCATCGCGTTGCCG
CTTCACATCTTTGCTGCCTTCGATATATAAAACAGCACAGATGGAGCATATATTACTGGCAGGAATTGTAGTTCTACAATATATGAAATCACCATTATAA
TCAGGGAAGACAACTGATCAGAGTCTACTCCTTCGAGGTGCGGACTGCGGACACGGTAGAGACCATGGAGTCGACGCCGCACTTGTTGCGAACATTGGAA
CCCCTGCATATCTTGTAGTATCCGTTCTCCCCCCAGTTCTCGCCCCACGAGTTCTTGATGATCCAGTATGGCTTGTCCTTCAGGCGAATGGGGGCAAAAC
CAGCTGCGCCATAGCCAACAAGGAGAACACCGTGGTCAAGGGTCCGGCGGAACTCGGCCGGCGTCAGGTCGGAGAACTTAGTGACGCCGTGCTCCGCCGA
CGGGTCCAGCAGCTGGTGCCGGCGCGCGCGGCGCAGGTTGGCCTTGAAGATGGACAGCCGGTACGCGTGCTCTTCGGCGTCCTTGTAGGACTTGCCGAAC
CGCTGCACAAAGCTCAGGAAGTGGGACTCCGCGTTCAGCTCCAGCTCGTTGTCATCTCCGCCGGGAACCACCTGCCGGATCAGCGGATCCTCCGTGTCGA
CGGCGGCGGCTACCGCGACGGCCGCCGCGAGAGAAAGGAGGAGGAGAACGCGATGAGCCATCGGGGATTC